KEGG   Vitis riparia (riverbank grape): 117904367
Entry
117904367         CDS       T07274                                 
Name
(RefSeq) protein SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117904367
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vri03019]
    117904367
   04131 Membrane trafficking [BR:vri04131]
    117904367
Messenger RNA biogenesis [BR:vri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     117904367
Membrane trafficking [BR:vri04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    117904367
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR3_2nd EIF3I Beta-prop_Aladin Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR35_TULP_N WD40_Gbeta Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_NUP159_NUP214 DSE1_N
Other DBs
NCBI-GeneID: 117904367
NCBI-ProteinID: XP_034672840
LinkDB
Position
2:complement(18550684..18563869)
AA seq 325 aa
MEKSLVTLDNGTTCSSWNYNGERLATGSVDGTLAIFDSIDPASSSFTCTSRSRVHEDSVV
KVVWVPPEYGDAVGCICADGTLSLWEEVVEDAQPLQWKLCKSFGSNSNKVLDVQFGVSPT
SLKMVSAYSDGHVKVYELLDPLELKSWQLQAEFQNASDSVSTFGKALCLSASVSWNPQRG
ESQQSSFVLGFHSDTPQLNSAKVWEFDQDHQRWLPVAELALHGDKGDQVFTVAWAPNIGR
PYEVIAVATHKGIAIWHLGLNPDIDGRLSVERVALLSGHDGEVWQMEWDMSGMTLATTGG
DGMVRLWQSNLNGVWHEQAALEPTS
NT seq 978 nt   +upstreamnt  +downstreamnt
atggagaaatctctggtgacactcgacaacggcaccacatgctcttcctggaactacaat
ggcgagagattggcaacgggctcagtcgatggaacactggccatcttcgattcaatcgac
ccggcttcttcatccttcacttgcacctccagatctagggtgcatgaggatagcgtagtg
aaagtggtttgggtccctccggaatatggcgatgcagttgggtgcatttgtgctgatgga
actttgtcattgtgggaggaggttgtagaagatgcacaaccccttcaatggaaactatgc
aaaagttttggaagtaattcaaataaagtgctcgatgtccaatttggagtctcgccaaca
agtttgaaaatggttagtgcatattcagatggccacgtgaaagtctatgagctcctagat
ccattggaactgaagagttggcaacttcaggctgaatttcagaatgctagtgattcagtg
tctacatttgggaaggctttgtgcttatctgcatctgtctcttggaatccacaaagaggt
gaaagtcagcaatcaagctttgtcttgggttttcattctgatactccgcaactcaattcc
gcaaaggtctgggaatttgatcaggatcaccaaagatggcttccagttgctgagttggct
ttgcatggggataagggtgatcaggtcttcactgttgcatgggcacctaatattggcagg
ccatatgaggtaatagctgttgcaactcacaagggaatcgcgatatggcatcttgggctt
aaccctgacattgatggaaggctctcagtggagagggttgccctgctttctggtcatgat
ggggaggtgtggcagatggaatgggacatgagcggaatgaccttggcaactactggagga
gatgggatggtaaggctgtggcagtctaacttgaatggtgtttggcatgaacaggctgca
ctggagcccacttcttag

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