KEGG   Vitis riparia (riverbank grape): 117904579
Entry
117904579         CDS       T07274                                 
Name
(RefSeq) LOW QUALITY PROTEIN: serine/threonine-protein kinase ATM-like
  KO
K04728  serine-protein kinase ATM [EC:2.7.11.1]
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    117904579
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:vri01001]
    117904579
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vri03032]
    117904579
   03036 Chromosome and associated proteins [BR:vri03036]
    117904579
   03400 DNA repair and recombination proteins [BR:vri03400]
    117904579
Enzymes [BR:vri01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.1  non-specific serine/threonine protein kinase
     117904579
Protein kinases [BR:vri01001]
 Serine/threonine kinases: Other
  PIKK family [OT]
   117904579
DNA replication proteins [BR:vri03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    117904579
Chromosome and associated proteins [BR:vri03036]
 Eukaryotic type
  Meiosis-specific proteins
   DSB formation-related proteins
    117904579
DNA repair and recombination proteins [BR:vri03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    117904579
SSDB
Motif
Pfam: TPR_ATM PI3_PI4_kinase FATC TAN
Other DBs
NCBI-GeneID: 117904579
NCBI-ProteinID: XP_034673148
LinkDB
Position
17:complement(10197742..10384297)
AA seq 3045 aa
MATITSRDVEEIVSKLSSDKTKAREEGIKLLNAWLEGEKSIRFCKFLGHNTAMLKPNEIP
HSETWPFLVTLLIRCVSLEISSSKKRLPKLVFAKTLRIVVQRAEDAKFSGKMLPLLTVVK
LLFSHISDVLRDIPSFQSEYGIMLRHILAVRDYRFHMRNRVYCNLVLLYMGKVETSFSEK
SNSQYNPKEEVFRCVLTLHSLLENPPGDFPDNLREDAVKGFIGIFSFLRDEGKISRKLIE
CINIFLLKDGPNLGCQCLEIHNAVQQFVFRSWLTSHDRGLKDAVISYARLQLNLTRGAAD
GSPLVEQLLDVVGRELDQTNISSTSVPWSDTAKDDRLGTLTSSQCGLVELAALVFYRACA
NPLKAPSTAKRAKREHAAAYLREGLMKGKWLWNAAFCCLTHNYHTRICKDLFVYWFEGIC
TSFERILNEANMEHAYDGLLWTLRSLQEFSSELLLPVLRAEMLMRSSFTSNEFDNGWHTI
WSCLMHGLPIFSNITSVVDAALVLLGNMVSNDLISTPIVPQEIWDLRLFKHMPSVSVLYF
ISSYFSRKGSQGDLRDILHLRQNLLRAILGLLEWEESFILNERMVVLLPATVYALCTGCV
PFTDCYKGLLISHSFLGVPDRIEDWLKTGEYERESLHEVFECSVEVLAEIDLSSNVKVSQ
PQCHQNVRLPRQLRDPLLNEMETFILATVGEKDSGKMLLSDVFFMCALLSNFIYSAFLTR
LREELSLFIIKLGKCVVKFLDRAASIVQESHNHIGEHGCLSRNSIFYGWDLVIASFRSLV
CSPLFIKWGDQIALDDALYSTIIQTIERLLKILANLYGKCSDCIRNLQSEIVPPDLSASD
IPVQNPCPVDSSEVRIMDMELDVSEDSKNVDIIAVSGTIASGISFSTGKWKLDMISLISS
FFPVLPAVTWEILFDLMKKETHSKVCENILYSLCQHSHWSSSTRLTDMVISMNNMIDMRV
NLKLPCYAILAAIRAFLGTLLSMGTAGKDKYVGLSMSRRESEQCLISLGDLVNRVAEFDF
LDWFGRIKLVDCIYDFILLNPQIGQTMIERLLTMLRDQDYRVRFFLARRIGVLFQTWDGH
DELFQDICSNFGIKLVMSLKGKLVTAMEVLDAGPQPHSTMETIIITLMHLAMYSEKMELE
AVFMMCTVSALDPCQRELVLAALDNLSRKLQYTTRSKYLEELIGSILFCWVTCGVSLVAL
VEIRDHFVPSVEPTYFMQYCCHWLLPALLLHGDTSNLKWVASVAGLPLAVLVKNHFVPIF
SVCMALHCSKKSGWEKGAVVLQSSILHVAEISEDERDKLIKKYMVSIVSNILSLASCASE
PALPFFSRDTIVLAIRNVVDGFLEMEDCPTSVGVVDKINIFRSDRVFMFIVEMHYKVTAA
VHHRHKCHRLADIEVLIDVLGHRAAVSSTSNYLFNLVGQFFGFNALQDQCSRIISMLLES
FKSNPSKEIIGVPGEQLQFLVSKLVACCIPSETNAELSGTRSSQVLSLLHQLTIGADPSL
YDYIRELEPFPEIDIFDEIREFHQELCRAYSPKDHFLKFVKRSSYLPPRLLLWSLQALHK
KLLVGEICRGEKNVKDVIGDTCWQADQDIVHAVWNLVHMCGSDDANSVRALVSDFISRVG
IGDPHCVVFHLPGDYSQIHVCRPIHHDSGAEISFPLDTNISEELLLALMRLLKKYLMDDS
VKIIDMTSQTLWGILSTERGQKALLSFDSYERSLIEVHSKGVNVELVEKLLLDLEKKFNG
RPEAIPLEKSTIWKTHEKTFEMWICPLVHSLIGFCNDTILRLCQDIVLLKAEVAELLLPN
VIVNLAGRKDLAVDLCKLISSQVQENIFVESNRSIKSIQVMLDALNELRLFYVMERTTSS
SIPLKRETSRYAKPSSFGSKSRSATAKAKDSSTMSSVALVSTSLWEKVYWLSIDYLDVAK
SAIICGSYFTSVMYVEHWCEEHFNSLTLGKPDFSHCEMLPHHIEILVSAITQINEPDSLY
GIIQLHKLTSQIITFEHEGNWSKALEYYDLQVRSEPVAGMDGSSRNLSPEHSQLTVHPSF
TKSEDVIRQREPYKGLIRSLQKIGCTHVLDLYCQGLTSRNGQFQHDLEFTELQYEAAWRA
GNWDFSLLYMGANSPSSSQHIRCDHFNENLHSCLRAFQEGDFNEFHSKLKDSKQELVLSV
CHASGQSTEYIYSTIIKLQIFYHLGMAWGLRWASPSEKIETSPGMQKVFSEPIIPTMDQL
SWLNTDWSSILKQTQLHMNLLEPFIAFRRVLLQILSSKDCMVQHLLQSSSTLRKGSRFSQ
AAAALHEFKFLCNRMGEQHSASYWLGRLEEAKLLRAQGQHEMAINLAKYISQNSQLNEEA
SNVYRLVGKWLAETRSSNSRTILEKYLKRAVLLAKDNKNTDKKTIERQSQTHFHLAHYAD
ALFRSHEERLASNEWQAATRLRKHKTIELEALIRRLKSSSKGEKTDYSVKIQELQKQLAM
DAEEAEKLQDDRDNFLSLTLEGYKRCLVLGDKYDVRVVFRLVSLWFSLSSRQNVVNMMLS
TIQEVQSYKFIPLVYQIASRMGSSKDGLGPHSFQFALVSLVKKMSIDHPYHTIFQLLALA
NGDRIKDKQRSRNSFVVDMDKKLAAENLLKELSSCHGSIIQQMKQMVEIYIKLAELETKR
EDTNKRVMLPREIRSLRQLELVPVVTSTFPVDRNCQYHEGSFPHFKGLGDSVMIMNGINA
PKVVECLGSDGQKYRQLAKSGNDDLRQDAVMEQFFSLVNTFLENHRDTWKRRLRVRTYKV
VPFTPSAGVLEWVNGTLPLGEYLIGSMRNGGAHGRYGMEDWSFSKCREHMTNEKDKRKAF
QEVCKNFRPVMHNFFLERFLQPADWFEKRLAYTRSVAASSMVGYIVXLGDRHSMNILIDQ
ATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEETLSVMRT
NKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDLETSLEDSEEEYEGNKDAARALL
RVKQKLDGYEEGEMRSVHGQVRQLIQDAIDPDRLCRMFPGWGAWL
NT seq 9138 nt   +upstreamnt  +downstreamnt
atggcgacgatcacttccagagatgttgaagagatcgtctcaaagctctcatcagacaaa
accaaagctcgagaagaaggaattaaattgttgaatgcctggttagaaggtgaaaagtca
atcagattctgtaaatttcttggacataacactgcaatgcttaaaccgaatgaaatacct
cactctgaaacatggccttttcttgttacattgctcatccgctgtgtatcattggagata
tcttcaagtaagaagcgattgccaaagttagtatttgccaaaacacttcgaattgttgtg
caacgagcagaagatgctaaattttctggcaagatgttgcccctgttaactgtggttaag
cttctgtttagtcatatctccgatgtgttaagggatatcccaagctttcagtctgaatat
ggcatcatgctcagacatattttggcagtcagagattatcgcttccacatgaggaatcgg
gtctattgcaatttggtgcttctatacatgggtaaggtggaaacaagcttcagtgagaag
agtaatagtcaatacaatccaaaagaggaagtcttccgttgcgtgttgacactccattcg
cttctggaaaatcctcctggagattttcctgataatcttagggaagacgctgtcaagggg
tttattggaattttctcttttctcagggatgagggaaagatttcacgcaagctaattgaa
tgcattaatatattcttgttaaaggatggtccaaatttaggttgtcagtgcttggaaatc
cataatgccgttcaacaatttgtgtttcgtagttggctcacaagccatgatcggggtctc
aaggatgcagttatatcttatgcaagattacagctaaatctaactagaggtgctgctgat
gggagtcctttagtggagcaacttctggatgtggttggaagggaactagatcagaccaat
atttccagcactagtgttccttggagtgacacagctaaggatgatagacttggaactttg
acaagctcacagtgtggattggtggagcttgctgcacttgtcttctaccgggcatgtgct
aatccgcttaaggcaccatcaacagcaaaacgagctaagagggagcatgctgccgcctat
cttagagagggtctcatgaaaggaaaatggttatggaatgctgccttttgctgtcttact
cataactatcacactcgtatttgtaaggatctattcgtgtattggtttgaaggcatatgc
actagctttgaaagaattttgaatgaggccaatatggagcatgcttatgatggtttgcta
tggactctccggagtttgcaggaattctcttctgagctgctgcttccagttttaagggca
gagatgttaatgaggtcatctttcacctcaaatgagtttgataatggttggcatacaata
tggagctgtctaatgcatgggttacctatattcagcaatatcacttcagttgtggatgct
gctttggtgctccttgggaacatggtttctaatgacctaataagtacgcccattgtacct
caagaaatatgggatcttcggttatttaaacatatgccatcggtgtctgttttgtacttc
atttcatcttatttttcaaggaagggctctcaaggggaccttcgagacattttacatctt
agacaaaacctcttaagagcaattttgggtttgcttgaatgggaggagtctttcatattg
aatgagcgtatggttgtcttgttgccggcaactgtttatgctctttgtactggttgtgtt
cctttcacagattgttacaaaggacttctcatttcgcactcttttttaggtgttccagac
agaatagaggactggcttaagacaggagaatatgagcgtgagagcctgcatgaagttttt
gaatgttctgtggaagtccttgcagaaattgatctgagctctaatgttaaggtttcccaa
ccccagtgtcatcagaatgtacgtcttccccgacagttaagagatccactactgaatgaa
atggaaaccttcattcttgcaactgtaggggaaaaggattccgggaagatgcttttgtct
gatgtgttttttatgtgtgctctgttatctaatttcatatacagtgcatttttaacaagg
ctgagagaagagctttccttgttcatcatcaaattgggcaaatgtgtggtaaaatttctg
gatcgtgctgcttctattgtccaagaaagccacaatcatattggggagcatggctgtttg
tcccgtaactccattttttatggatgggatctggtgatagcttcctttagaagcttggtt
tgctctcctcttttcatcaaatggggagatcaaattgctcttgatgatgcactctatagt
acaataattcagaccattgagaggcttttaaagattttggctaatttatatgggaagtgt
tctgattgcataaggaatcttcagtctgagatagtccctccagacttatctgcttctgac
attcctgtccaaaatccatgcccagtcgatagcagtgaagttaggattatggacatggaa
ttggatgttagcgaggattctaaaaatgtggatatcatagctgtcagtgggacaattgct
tctggcatttctttttccacagggaagtggaagttggacatgatatcattaatttcaagt
tttttcccagttttaccagctgtaacatgggaaatcttatttgacctcatgaaaaaagaa
actcattcaaaggtgtgtgaaaatattttatatagtctttgtcagcattcgcactggtcc
tcttcaacaagacttacagacatggtcatttcaatgaacaacatgattgacatgcgagtg
aaccttaagctcccatgttatgctatactagctgctatccgtgcttttctggggactcta
ttatccatgggcacagctggaaaggataaatatgttggtctatcaatgagcagaagagaa
tctgaacagtgcttgatttcccttggagatttggtgaacagagttgctgaatttgatttt
cttgattggtttgggcgcattaagctggtcgattgcatctatgattttattttgcttaat
cctcaaattggtcagacaatgattgaaaggcttcttacaatgctccgagatcaggattat
cgagttaggttcttcctggctagacgaattggtgttcttttccaaacatgggacggacat
gatgagctattccaggatatttgctcaaactttggcattaaattggttatgtccttgaaa
ggaaaacttgttacagcaatggaggtcctggatgctggccctcagcctcattcgacaatg
gagactattattattactctaatgcatcttgcaatgtatagtgagaaaatggagttggag
gctgttttcatgatgtgcactgtttctgcccttgatccttgtcagagggagttggtcctt
gcagcacttgataatctgtcaagaaaactccagtatacaactaggtcaaagtacttggag
gagcttataggatctattctcttttgttgggtcacatgtggcgtaagcttagttgcactt
gttgagataagggaccattttgttccaagtgttgaacctacatatttcatgcagtattgc
tgccattggcttcttccagctctacttctacatggggacacatccaatctcaaatgggtt
gcttcggttgctggtctacctctggcagttctggttaaaaatcattttgtgcccatcttt
tcagtctgtatggcattgcattgcagtaagaagtctgggtgggaaaaaggagcagtagtg
cttcagagttcaattttgcatgttgcagaaatatcagaagatgaaagagacaaactcatt
aagaaatatatggtatccattgtcagcaacattttgtcacttgcctcttgtgcatcagaa
cccgctctcccttttttttccagggatacaattgtgcttgcaattcgaaatgttgttgat
ggattcttggagatggaggattgccctacaagtgttggtgttgttgacaagattaacatt
ttccgatcagatagagtgttcatgtttatcgttgaaatgcattacaaagtcacagcagca
gttcatcataggcacaaatgtcatcggttggctgacattgaggtactcattgatgttctt
gggcatcgggctgcagtttcaagcacttccaattatcttttcaacttggtcggacaattc
tttggttttaatgctttgcaagaccaatgcagtcgcatcatttctatgttgcttgaaagt
tttaaaagtaacccatccaaagaaattattggtgtgcctggggaacaacttcagttttta
gtatcaaagttggttgcctgttgcattccctctgaaacaaatgcagagctttctggaact
cgatcatctcaagttttatctttgctccaccaactaactattggtgctgatccgtctctt
tatgactacatcagagaattggaaccatttcctgaaatagatatctttgatgagataaga
gaattccatcaggaattatgccgagcctactctccaaaagaccactttttaaagtttgtg
aagagatcttcctaccttccaccaagattacttttgtggagtcttcaagcacttcacaag
aaattacttgtgggagaaatttgtcggggagagaagaatgtgaaggatgttattggagat
acgtgttggcaggctgaccaggatattgtacatgcagtctggaacctagtccacatgtgt
ggttcagatgatgcaaatagtgttagagcattggtgtctgattttatttctagggttggt
attggagatccacattgtgttgttttccatctgcctggagactatagtcaaatacatgtt
tgtcgaccaattcatcatgacagtggtgcagaaatcagttttcctctggacactaacata
tctgaagaacttctgcttgcccttatgagacttttgaagaagtatctaatggatgattca
gttaagataattgatatgacatctcagactctttgggggatactttcaactgaacggggc
caaaaagcattactgtcatttgattcttatgagaggtctcttattgaggttcactccaaa
ggtgtcaatgtcgaactagtggagaagttactattggatcttgagaaaaagtttaatggt
agacctgaagcaattccgttggagaagtctactatatggaagacacatgaaaaaactttt
gagatgtggatttgtccacttgttcactctctcatcggtttttgcaacgatacgattcta
agattatgtcaagatattgtgctgctcaaagctgaagttgcagagctcctgctgcccaat
gttattgtcaatctggctggaaggaaagatttggctgttgatctgtgcaaattaatctct
tcacaggtgcaagaaaatatatttgttgagtccaataggtcaatcaaatcgattcaggtt
atgttagatgcacttaatgaactccgactgttttatgtcatggaaagaactacttcatct
tctatacctctcaagcgagaaacatcaaggtatgctaagccttctagctttggctcaaaa
tcccgttctgctactgcaaaggctaaagattcatcaactatgtcaagtgttgcactagta
tcgacatctttgtgggaaaaggtttattggctttccattgattatcttgatgttgctaag
tcagcaattatttgtggctcgtactttacctctgtaatgtatgtggagcattggtgtgaa
gagcatttcaacagcctcacactggggaagccagatttttcccattgtgaaatgttacca
catcacattgaaatactagtctcagcaatcactcaaattaatgaacctgacagcttgtat
gggatcatccagttgcacaagttaacctcgcaaattattacctttgagcatgagggaaat
tggagcaaggctctggagtattatgacttacaagtaaggtcagaaccagtagcaggaatg
gatggctcttccagaaatttgtcacctgaacattctcaactaacagttcatccatcgttt
accaaatcagaagatgtgatcaggcagagggaaccttacaaagggctgattagatcattg
cagaaaattggttgtactcatgtgcttgatctgtactgccaaggattgacttctcggaat
ggccagtttcagcatgatttagaattcactgaactgcagtatgaggctgcttggcgtgct
ggaaactgggatttctcgttactttacatgggagctaattctccttcttctagtcaacac
attagatgtgatcatttcaatgaaaacttgcacagttgtttgagggcattccaagagggg
gatttcaatgaatttcattcaaaactgaaagattcaaagcaggagcttgtattgtctgtg
tgtcatgcaagcggccagagtactgaatacatttactcaaccataatcaaacttcagatc
ttttatcaccttggcatggcatggggtttacgttgggcatctccatctgaaaagatagaa
acttctccagggatgcaaaaagtattttctgaacccatcattcctacaatggaccagttg
tcatggctgaatacagattggagctccattttgaagcaaacacagttgcatatgaatttg
ttagaaccattcatagcattcaggagagttctgctccaaattttgagtagtaaagactgt
atggttcaacatcttctgcagtcctcttccacacttcgtaagggttccaggttttctcaa
gctgctgcagctctgcatgagtttaagttcctttgtaacagaatgggagaacaacattct
gcctcttattggcttggaaggcttgaagaagctaagcttttgcgtgcccaaggtcagcat
gagatggccatcaaccttgcaaaatatatatcacaaaattcacagttgaatgaagaggct
tcaaatgtgtatcgcttggttgggaagtggcttgcagaaactcgatctagcaactcaaga
actattttagaaaagtacttgaaacgtgcggttttacttgctaaggataacaagaacaca
gacaagaagaccatagaaagacaaagccaaacacactttcatcttgcacattatgcagat
gctttatttaggagtcatgaggaaagacttgcctctaatgaatggcaagcagcaacaaga
ctaaggaaacacaagacaatagaattggaagcactaatcagacgactgaaaagttcatca
aagggggagaagactgactattcggtaaaaattcaagagttgcagaagcaacttgcaatg
gatgcagaggaggctgaaaaattgcaggatgacagagacaacttcctcagcctaacattg
gagggatataaacgctgtttggtcttaggtgacaaatatgatgtaagagtggtatttcga
ctagtttctctgtggttcagtctctcttctagacaaaatgtcgtaaatatgatgcttagt
acaattcaagaggttcagtcttacaagtttatcccactagtttaccaaattgcttcgaga
atggggagctcaaaagatggtctgggtcctcatagctttcagtttgctttggtttctctt
gtgaaaaagatgtccatcgatcatccataccatacaatcttccagcttttagctctggca
aatggtgaccgtatcaaggacaaacagcgtagtagaaactctttcgtggtcgatatggat
aaaaagcttgcagcagaaaacctcttaaaagagttatcttcatgtcatggatctattatc
caacaaatgaaacaaatggtggagatctacatcaaacttgctgaactagagacaaaaaga
gaggacaccaataaaagggtaatgctaccaagagaaattcgtagtcttcgacaacttgaa
cttgtacctgtagtgacatccactttcccagtagatcgtaattgccaatatcatgagggc
tccttcccccacttcaaaggattgggagattcagttatgataatgaatggtataaatgct
ccaaaagtggttgaatgcctgggttctgatggccaaaaatatcggcaacttgcaaaatct
ggaaatgatgacctgcggcaagatgctgttatggaacaattttttagtttagtaaatact
tttttagagaaccatcgggacacatggaaaaggagattaagagtgcgcacatacaaggtt
gtacctttcacccctagtgcgggcgttcttgaatgggtaaatggtactcttcctcttggt
gaatatcttattggaagcatgaggaatggaggtgcccatggacgctatggaatggaagac
tggtcattttccaaatgccgggagcacatgacaaatgaaaaagacaagcgcaaggcattc
caggaagtctgcaagaacttcagacctgtcatgcataattttttcttggagagattttta
caaccagctgactggtttgagaagcgccttgcttacacaaggagtgtagcagctagttca
atggtgggatacattgttngacttggagatcgacattccatgaatatacttattgatcaa
gccactgccgaagttgttcacatagatcttggtgttgcctttgaacaaggcctgatgctc
aaaacaccagagagggttccatttaggctgacaagagacataatagatggaatgggagtt
actggggtagagggggttttcagaagatgttgtgaggaaactctttctgtcatgcgaaca
aataaagaagcactgctaaccattgttgaagtttttatccatgatcccctatataagtgg
gctctctctccactgaaggctttgcagcgtcaaaaggaaactgatgatgatttggagact
agcttggaagactcggaagaggaatatgaagggaacaaagatgctgcacgagcactgttg
cgtgtcaaacaaaaacttgacggatatgaagagggtgaaatgagaagtgtgcatgggcag
gttcgacaactgatacaagatgccatcgatcctgatcgtttgtgccgaatgtttcctgga
tggggtgcttggttgtga

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