Vitis riparia (riverbank grape): 117904825
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Entry
117904825 CDS
T07274
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117904825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vri03400
]
117904825
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117904825
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Exonuc_VII_S
Motif
Other DBs
NCBI-GeneID:
117904825
NCBI-ProteinID:
XP_034673487
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Position
17:15790690..15809512
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AA seq
945 aa
AA seq
DB search
MDQDSQDHSKLPELKLDAKQAQGFLSFFKTLPRDPRAVRFFDRRDYYTAHGENATFIAKT
YYHTTTALRQLGSGSDGISSVSVSKNMFETIARNLLLERTDHTLELYEGSGSNWRLVKSG
TPGNLGSFEDVLFANNEMQDSPVIVALFPNFRENGCTVGLGFVDLTRRVLGLAEFLDDSQ
FTNVESALVALGCRECLLPSESAKSSETRTLHDALSRCGVMLTERKRTEFKARDLVQDLG
RLVKGSIEPVRDLVSGFELAPGALGLLLSYAELLADESNYGNFTIQRYNLDSYMRLDSAA
VRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDVNEINCRQDLVQAF
VEDTALRQDLRQHLKRISDIERLLRTLEKGRASLQHVVKLYQSSIRLPYIKSALGQYDGQ
FSSLIKEKYLDPLESWTDDDHLNRFIGLVEAAVDLNELENGEYMISSGYDAKLASLKNDQ
ETLELQIHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFRITKKEEPKIRKKLTAQFIVLE
TRKDGVKFTNTKLKKLGDQYQKILDEYKDCQRELVVRVVQTAATFSEVFENLARLLSELD
VLLSFADLATSSPTAYTRPEISPSHMGDIILEGSRHPCVEAQDWVNFIPNDCKLVREKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKANISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATH
FHELTALAHENTDHQPPEKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVSLAREKAAELEDFSPTEIVSNDASDKGLKVGSKRKRESSPDDISRGAARA
HQFLKEFSDLPLEKMDLKEALQQVSKLKNDLEKDAVNCHWLQQFF
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagattctcaagatcacagcaagctccctgagctcaaactagatgctaagcaa
gctcaggggtttctctccttctttaaaaccctaccccgggaccctcgagctgttcggttc
tttgatcgccgggactactatactgctcatggtgagaatgcgactttcattgcaaagaca
tattaccacactaccaccgctttgcgacaactgggtagtggatctgatggcatttctagt
gtgagtgtgagcaaaaacatgtttgaaacgattgctcgtaatcttttattggagagaaca
gatcacactctcgaactctatgagggtagtggctcaaactggagactggtgaaaagcggg
acccctggaaatcttggaagttttgaagatgttttgtttgccaataatgagatgcaggat
tctcctgtgattgttgcactttttccaaacttccgtgaaaatggatgcactgtcgggttg
ggctttgttgatttaactaggagagtcctcggattggctgaatttcttgacgatagtcaa
tttacaaatgtggagtcagctttggttgcccttggttgcagggagtgccttctgccttca
gagagtgccaaatccagtgaaactagaacattgcatgatgcattgtcaagatgtggtgtg
atgttaactgaaagaaagagaactgagttcaaggcaagggatttggtgcaggatcttggt
aggcttgtcaagggttcgattgaaccagttcgtgatttagtttcaggttttgaacttgca
cctggagctttggggttattactgtcttatgcagaattacttgcagatgagagcaattat
ggaaattttaccatccagagatacaatcttgacagctacatgagattggattctgctgcc
gtaagggcattgaatgtcctggagagcaaaacggatgcaaacaaaaattttagtctattt
ggtctcatgaatagaacctgtactgctgggatgggaaagagattactgcacatgtggttg
aaacagcctttagtagatgtaaatgaaattaactgcaggcaggatttggtgcaagcattt
gtggaagatactgcactccgccaagatctgagacaacatttaaaaagaatatcagatatt
gagcgattgttgcggactcttgagaaggggagagctagtctgcagcatgttgtaaaactt
tatcagtcaagtattagacttccatacattaaaagtgccttgggacagtatgatggacaa
ttttcatcactaatcaaagagaagtatttggatccccttgagtcctggacagatgatgat
catttaaataggttcattggtcttgtggaagctgctgttgaccttaatgaactggagaat
ggggaatacatgatctcatctggttatgatgcaaaactagcttccctgaaaaatgatcaa
gagacactggagctccaaatacacaatctacataaacaaactgctattgatcttgatctg
cctatggataagtctttaaagttagagaagggcacacaatttggccatgtgtttagaatt
acaaagaaggaagagccaaaaattcggaaaaagctcactgcccaatttattgtccttgaa
acccggaaagatggggtaaaatttacaaacacaaagcttaaaaaattaggggatcaatac
caaaagatacttgacgagtataaggattgtcaaagagagctggttgtccgagtagttcag
actgcagcaactttctctgaggttttcgagaatttagctcgcttgctttctgaacttgat
gtcttacttagttttgccgatttggcaactagttctcctactgcctacacaagacctgaa
atctctccatcacacatgggagatatcatattagaaggaagtagacacccttgtgtggag
gctcaagactgggtgaattttataccaaatgattgtaagcttgtcagggaaaagagttgg
ttccaaatcatcacagggcctaacatgggtggaaaatctacattcattagacaggttggt
gtgaacatcttgatggcacaagttggctcatttgttccttgtgacaaagccaatatttct
gttcgagattgtatttttgctcgtgtgggtgctggtgactgccaactacgtggcgtttct
acctttatgcaagaaatgcttgaaactgcatcaatattgaaaggtgctactgataagtca
ttgataatcattgatgaattgggccgtggaacatctacatatgatggatttggtttagct
tgggctatatgcgagcacattgttgaagtgattaaagcacctactttgtttgccactcac
tttcatgaactaactgcattagctcatgaaaatactgatcatcagcctcctgaaaagcaa
attgttggtgtggccaattaccatgttagtgcacacattgactcatcaagtcgcaagttg
actatgctttacaaggttgagccaggggcttgtgaccaaagttttggtatacatgttgca
gaatttgcaaactttcctgaaagtgttgtcagtcttgcgagagaaaaggctgctgagttg
gaagatttctcacctactgaaatcgtttcaaatgatgctagtgacaagggcttaaaggtg
ggatccaaacgaaagagagagagtagtcctgatgacatttctagaggtgctgcccgggct
caccagttcttgaaagagttctctgatttgccattagagaaaatggacttgaaggaggct
ctgcaacaagtgagcaagttgaagaatgacttggagaaggatgcagtgaactgtcactgg
ctccagcaattcttctag
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