Vitis riparia (riverbank grape): 117904869
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Entry
117904869 CDS
T07274
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117904869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117904869
03036 Chromosome and associated proteins [BR:
vri03036
]
117904869
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117904869
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117904869
PBAF complex
117904869
GBAF(ncBAF) complex
117904869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
117904869
NCBI-ProteinID:
XP_034673565
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All DBs
Position
17:complement(20039449..20046117)
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AA seq
573 aa
AA seq
DB search
MESTPDPSSKLTRHDEPELDLYTIPIHSSWFSWDEIHEKEKISLKEFFDGSSISRTPKIY
KEYRDFIISKYREDPSRRLTFAEIRKSLVGDVSLLHKVFLFLERWGLINFGAPGGEDSAA
VAEGAERHRVRSEDGAPNGIRVVAMPNSLKPITMPLTLDVNGEVDENGFRLPPLASYSDV
FCDLTKEKGLVCGNCGDNCDSGHYNCLKQGSPVICVKCFKNGNYGENRSVDDFKFNDCNE
NRGNQGAVWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIELPFGELMLGSS
LGKSRASNDNTSSIKPVQTSLESQENIKNGGQGDEQINESEQNGDAENQGPPLKRKCITS
LSDAGISLMKQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIFDGAEDNVTEELGSP
IRNNELERSLMVEDSEINERPTLSEMQKTSSEKNAIPLPLQMRAAIATALGAAAANAKSL
ADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHLKELKESIIAERIDILQ
RVFNAGISRWRDPISVKSHTGSPILVCDLTDAR
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggagagcacaccggacccgagttcaaaactgactcgccacgacgaaccagagctcgac
ctctacaccatcccaatccattcaagttggttctcttgggacgaaatccacgaaaaagag
aagatctccctcaaagagttcttcgatggaagttcaatctcgagaacaccgaagatatac
aaagagtacagagacttcatcatctctaagtacagagaagacccgtcgaggaggcttacc
ttcgcggagattcgtaaatcactggtgggtgacgttagtttgctccacaaggtctttctc
ttcttggagaggtgggggttgatcaatttcggtgcacctgggggtgaggattcggcggcg
gtggcggagggtgccgaaaggcacagagtgaggtccgaggatggagctccgaatggaatt
cgggtcgtggcaatgcccaattcgttgaagcccatcacaatgccgctgactttggatgtg
aatggtgaagtggatgagaatggatttagattgccgccattggcttcctattcggatgtt
ttctgtgatttgactaaggagaaaggattggtttgtgggaactgcggggataattgtgat
tccggacattacaactgcttgaagcaggggagtcctgtaatttgtgtgaaatgcttcaag
aatggaaattacggggagaaccgatctgttgatgatttcaagtttaatgattgcaatgaa
aacagaggcaatcaaggagctgtttggactgaggcagaaactttacttcttttggaatca
gttttaaagcatggagatgactgggagcttgttgttcaaaatgttcaaaccaagacaaaa
cttgattgtatttcaaagctcatagagctgccatttggggagcttatgttgggttcttcc
ctaggtaaatctagggccagcaatgacaatacaagcagtatcaaaccagttcagacttca
ttagagtcccaagagaatataaaaaatgggggtcaaggagatgagcagataaatgagagt
gagcaaaatggagatgctgagaaccaaggccctcctttgaagcgaaaatgcattacttca
ctttctgatgctggcatctcactgatgaaacaggtagctgtcatctcaaccatggttggc
ccacatatatcagctgctgcggctgatgctgctgttgcagcactctgtgatgaaaaccca
tgtgtgaaggatatttttgatggtgcagaggataatgtaacagaagagttaggctccccc
attcggaataacgagctggagagatcacttatggttgaagattcagagataaatgaaagg
cccactctatcagaaatgcagaagacatcctctgagaagaatgccatacctctacctttg
caaatgagggctgcaattgcaacagcccttggagcagctgctgcgaatgccaaatcattg
gcagatcaggagcacagagagatagaacatttagtggcaaccataattgaaacacagatg
aagaaacttcactgcaaaatccagcattttgaagacttggagctgataatggagaaggaa
tacacccacttaaaggaactgaaagagtctatcatagcagagcggattgatatcttgcaa
agggtatttaatgctggaatatctagatggagggatcctatttctgtaaaatctcatact
ggctcccccatactggtatgcgaccttactgatgctcgctga
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