Vitis riparia (riverbank grape): 117905241
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Entry
117905241 CDS
T07274
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri00040
Pentose and glucuronate interconversions
vri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117905241
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117905241
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
117905241
NCBI-ProteinID:
XP_034674086
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Position
17:7962529..7964603
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AA seq
403 aa
AA seq
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MASSSLSLFFLFSLLSPILIASSPVQDPELVVQEVHRSINESRRNLGYLSCGSGNPIDDC
WRCNANWEKNRQSLADCAIGFGKNAIGGKNGKIYVVTDSSDDDVVNPKPGTLRYAVIQDE
PLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGLNIHDCK
QGGNTNVRDSPSHYGFRTISDGDGVSIFGGSHIWVDHCSLSNCHDGLIDAIHGSTAITIS
NNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW
EMYAIGGSADPTINSQGNRFLAPNDRFSKEVTKHEDAPESQWKNWNWRSEGDLMLNGAYF
TPSGAGASSSYAKASSLGARPSSLVASITGSAGSLSCKKGSRC
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggctagctcttcactttccctcttcttcctcttctctctcctgtctccaattctcatt
gcctcctctccggttcaggaccctgaactggtggtacaagaagtacataggagcatcaat
gagtcaaggaggaacttggggtatctgtcttgtgggagtgggaaccccattgatgactgc
tggaggtgtaacgccaattgggagaagaaccggcagagcctggctgattgtgcaattggg
tttgggaagaatgccataggtggcaagaatggaaagatttacgtggtcacagactccagt
gatgatgatgtggtgaatcctaagccggggactcttcggtatgcagtcatccaagatgag
cccttgtggatcatctttgctcgggacatggtgattaagttgaaggaagagttgatcatg
aactccttcaagaccattgatggcaggggagctagtgttcacattgcaggtggaccatgc
attactatacagtttgtgaccaacattatcatacatggactcaacatccatgactgcaag
caaggagggaatactaatgttagagactccccaagtcactacgggtttaggacgatatca
gacggtgatggggtgtccatctttggtggaagccatatctgggtagaccactgctcactc
tcaaactgccatgatggactcatcgatgccatccatggctccactgccatcactatctca
aacaattacatgactcaccatgataaagtcatgcttttgggccacagtgattcctacact
caggacaagaacatgcaagtcactatagccttcaatcactttggagaagggcttgtccaa
agaatgccaagatgtagacatggctacttccatgtggtaaacaatgactacacccattgg
gaaatgtatgccattggagggagtgctgacccaaccatcaacagccaaggcaataggttt
cttgcacccaatgatagattcagcaaagaggtgaccaaacatgaggatgcaccagaaagt
caatggaagaactggaattggaggtcagagggagacttgatgttaaatggtgcatatttc
acaccatcaggggcaggagcctcatcaagttatgccaaggcatcaagcttgggggcaaga
ccatcttccttggtggcttccatcactgggtcagcaggttcacttagctgcaagaaaggt
tctcgatgctga
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