Vitis riparia (riverbank grape): 117905328
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Entry
117905328 CDS
T07274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117905328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117905328
03012 Translation factors [BR:
vri03012
]
117905328
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117905328
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117905328
Translation factors [BR:
vri03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117905328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_16
HJURP_C
T2SSE
AAA_19
PhoH
Motif
Other DBs
NCBI-GeneID:
117905328
NCBI-ProteinID:
XP_034674129
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All DBs
Position
18:complement(25896089..25993495)
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AA seq
1136 aa
AA seq
DB search
MYSRLAFLLLSSPFKPRLSRPPTLSFLSSLPTPSSFIRRRGLCGYAAEQFSDDEYDCDFE
SHKASSSVANIDEWKWKLSLLSRNEQDQEIVSRDKKDRRDYEQISNLANRMGLYSEIYGK
VMVVSKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRMLLSSGKVSDCSDDA
KGNGGFEDVNPEDNPDSLLDGSVMEKVLQRRSLRMRNMQRAWQESPEGKKMLDFRKSLPA
FREKERLLQAIARNQVVVVSGETGCGKTTQLPQYILESEIESGRGAFCSIICTQPRRISA
MSVSERVSTERGEPLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVF
VDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNFFGGAPTIHIPGFTYP
VRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLVPRKRKNKITALVEDALTKSSF
ENYSSGVRDSLSCWTPDCMGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQIRAH
PLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRKIVLATNMAEASITINDVVFVVDCG
KAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPSCVYEAFSEYQLPE
LLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKMIGALDEKENLTNLG
EYLSMLPVDPKLGKMLIMGTIFRCFDPILTIVAGLSVKDPFLLPQDKKDLAGTAKSRFSA
KDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKDAGLLD
ADANTNNRLSHNQSLVRAIICSGLFPGIASVVPRETSMSFKTMDDGQVLLYANSVNARYQ
TIPYPWLVFGEKVKVNTVFIRDSTGISDSILILFGGTLSRGAMAEHLKMLEGYIDFFMDP
SLAECYWKLKEEFDKLLQKKLQNPSLDIHKEGKYLMLGIQELVSGDQCEGRFVFGRESKK
PREPCDSNRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKP
KKNKQLAERDAAIEALAWLTHTSDNSQGEYGEDESPPDVTNNMLKILGKRRRSKGR
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgtattcgaggctagcatttctcttgctttcctccccatttaaaccaaggctttcacgc
ccgcctactctttctttcctctcttctctccccactccttcttccttcattcgccgccgg
ggactttgcggatacgccgccgagcagttctccgatgatgagtacgactgcgattttgag
agccataaggcatcatcctcagtggcgaacattgatgagtggaaatggaaactcagcctg
ctatcacgcaatgaacaagatcaagagattgtgtccagagataaaaaagataggagagac
tatgagcagatttctaatctcgccaacaggatgggtctttacagtgaaatatatggaaaa
gtgatggttgtgagcaaggttccactacccaactacagaccagatcttgatgataaacgg
ccacagagggaggtagttatcccactaagcttgcagaggagagtagagggtctacttcag
gaacatcttgatagaatgctgttgagttctggaaaggtcagcgactgttctgatgatgcc
aagggcaatggtgggtttgaagatgtgaatcctgaagataatccagactctctcctagat
gggtctgttatggaaaaggttcttcagaggaggagtttgcgaatgcgtaatatgcagagg
gcttggcaggagtcacctgaaggtaagaagatgctggactttaggaaatctctccctgca
tttagagagaaggaaaggttgctccaggcaattgcacgaaaccaggttgttgtggtttct
ggggagactggatgtggtaagacgactcaacttcctcaatacatattggagtcggaaatt
gaatctggtcgtggagcattctgtagcataatttgtactcagcctcgaagaatatctgct
atgtctgtttctgaaagggtgtctacagagagaggagagcctctgggtgaatcagttggc
tataaagttcgattggagggaatgaaaggaaaaaatacccatctacttttctgtaccagt
ggtattttgcttcgaaggttgttgagcgaccgcaacctgaatggtataacccatgttttt
gttgatgaaattcatgagcgaggcatgaatgaagatttcctattgattgtgttgaaggac
cttctcccacgtcgtcgggatttgagattgattttaatgagtgctactcttaatgctgag
ctcttttccaatttttttggtggagcaccaacaattcacattccgggctttacatatcca
gtgagagcccactttctggaagatgtgttagaaatgacaggatataagttgacttcattc
aaccaaattgatgattatggccaagagaaaatgtggaagactcagaagcagctagtacca
aggaaaaggaaaaacaagatcactgctcttgttgaggatgctcttactaagtcaagcttt
gagaattatagctctggagtacgtgattcgctgtcatgttggacgcctgattgcatggga
tttaatcttattgaggcagttttatgccacatatgtcggaaagaacggccaggtgctgtg
ttagtattcatgacaggttgggaggacattagctgtttgagggatcaaattagagctcat
cccctcctaggggatcctaatagagttctgctgcttacgtgccatggttcaatggcaact
tctgaacagaaactcatatttgagaagccgcctcctaatgtacgtaagatagttcttgca
acaaatatggcagaagcaagcattacaatcaatgatgtagtttttgttgttgactgtggg
aaagcaaaagaaaccacctatgatgccttgaataataccccttgtctactgccatcttgg
atatcacaagcttctgcccgacaaagaagaggtagggctggtcgtgtgcagccaggggaa
tgttaccacctatacccctcatgtgtttatgaagctttttctgaatatcaacttcctgaa
ctgctgagaactcctttgaattctctatgcttgcaaataaaaagtcttcaggttgggagt
attggagaattcttatcagccgcactgcagccaccagaaccattggctgtccaaaatgct
gttgattttctgaagatgattggagctttggatgagaaggaaaatcttacaaatcttggt
gagtatttatcaatgctcccagtggatcccaagcttgggaaaatgctaatcatgggcact
atcttccgttgctttgatcctattctaacaattgtggctggacttagtgtcaaggatcct
ttccttttgcctcaagacaagaaggatttggcagggacagcaaaatctagattctctgca
aaagactatagtgaccacatggctcttgttcgtgcatatgaaggatggaaagacgcagaa
agagaaggatcagcatatgagtattgctggaggaatttcctctctgcccagactcttcag
gctatccattctcttcggaaacagtttagcttcattctaaaagatgctggcttactagat
gcagatgcaaacaccaataatagattaagtcataaccaatcattggttcgtgcaatcata
tgctctggtctcttccctggcatagcatctgttgtgccaagggaaacgtcaatgtctttc
aaaacaatggatgacggccaagttttactctatgcaaattctgtgaatgcacgttaccag
acaattccctacccttggcttgtctttggtgaaaaagtgaaggtcaatacagtttttata
cgggattctactgggatatctgattcaatactgatcctttttggtggtactctgagccgt
ggagcaatggctgagcatttgaaaatgttggagggttacattgatttcttcatggatcct
agtttggcagagtgctattggaagcttaaagaggaatttgataagcttttacaaaagaaa
cttcaaaatcctagcttggacatccacaaggaaggaaagtaccttatgcttggcattcag
gagctggtatctggagatcagtgtgaagggagatttgtatttgggcgtgaaagcaagaaa
ccaagggagccttgtgacagcaacagatttacaaaagatggaacaaacccgaagagcttg
ctacaaactcttctgatgcgagcagggcattcccctccaaaatacaaaacaaagcacctc
aaaacaaatgaattcagggcactggtggagttcaagggaatgcagtttgtggggaagccc
aagaaaaacaagcagctcgcagagagggatgcagccatagaggcattagcctggttgact
cacacatctgacaacagtcagggtgaatatggcgaagatgagtcccctcccgatgtcact
aacaacatgctaaaaattcttggaaagcgcagaagatcaaagggtcgatga
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