KEGG   Vitis riparia (riverbank grape): 117905357
Entry
117905357         CDS       T07274                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03030  DNA replication
vri03410  Base excision repair
vri03420  Nucleotide excision repair
vri03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117905357
   03410 Base excision repair
    117905357
   03420 Nucleotide excision repair
    117905357
   03430 Mismatch repair
    117905357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vri03032]
    117905357
   03036 Chromosome and associated proteins [BR:vri03036]
    117905357
   03400 DNA repair and recombination proteins [BR:vri03400]
    117905357
DNA replication proteins [BR:vri03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    117905357
  DNA Replication Termination Factors
   ELG1-RFC complex
    117905357
Chromosome and associated proteins [BR:vri03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    117905357
DNA repair and recombination proteins [BR:vri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     117905357
  Check point factors
   HRAD17(Rad24)-RFC complex
    117905357
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_16 AAA_24 Mg_chelatase AAA_11 AAA_5 AAA_14 AAA_2 AAA_assoc_2 ResIII SLFN-g3_helicase nSTAND3 PhoH AAA_28 AAA_19 AAA_30 AAA_7 DNAX_ATPase_lid AAA_18 AAA_25 CPG4 RNA_helicase Parvo_NS1 NPHP3_N IstB_IS21 bpMoxR DUF815 TIP49_C TIP49 NB-ARC
Other DBs
NCBI-GeneID: 117905357
NCBI-ProteinID: XP_034674160
LinkDB
Position
18:2481744..2488767
AA seq 341 aa
MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLIGVSGVV
PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICK
RLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHES
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcgccagtgttgcagagctctcagccatgggtggaaaaatatcgcccgaagcaagtg
aaggacgtagctcaccaggacgaggtggttcgagtgcttaccaacacccttgagaccaca
aattgcccgcacatgctgttctatgggccgcccggtaccggaaaaaccaccactgcgctt
gccattgctcatcagcttttcggacctgaactctacaagtcaagggtgcttgaactgaat
gcaagtgatgaccgtgggatcaatgtagttcgtacaaagatcaaagattttgctgccgtt
gctgtaggatctggtcaccggcaagggggttatccttgtccaccttacaagattatcatc
ttagatgaggctgattcaatgactgaagatgcccagaatgctttgagacgaacaatggaa
acatactccaaagttacaagattctttttcatttgtaactacattagcagaattatagaa
ccacttgcttctagatgtgcgaagtttaggttcaagccactttcagaagaaatcatgagc
agccggatattgcatatttgtaaagaagaagagctcaatctggattcagaggctctctca
accttaagttctatctcacaaggtgatcttcgtcgggcgataacatacttgcagggagct
gctcgcttatttggatcaattatttcttccaaggacctaatcggtgtatctggggttgtt
cctcagcatgttgttcaggctctttttgcagcttgcaaaagtggtgattttgattcagca
aataaggaagtcaataatgtcattgcagagggatatccggtttctcagatgctttatcag
ttatttgatgtagttgttgaagcagatatatcagatgaacagaaagcaagaatttgcaag
agattggctgaggcagataagtgtcttgttgatggagcagatgagtatctgcagctgctg
gatgttgccagcaatgcaatgcgagctctttgcaacatgccagaagaatttcctcatgag
agctag

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