KEGG   Vitis riparia (riverbank grape): 117905892
Entry
117905892         CDS       T07274                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03030  DNA replication
vri03410  Base excision repair
vri03420  Nucleotide excision repair
vri03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117905892
   03410 Base excision repair
    117905892
   03420 Nucleotide excision repair
    117905892
   03430 Mismatch repair
    117905892
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vri03032]
    117905892
   03036 Chromosome and associated proteins [BR:vri03036]
    117905892
   03400 DNA repair and recombination proteins [BR:vri03400]
    117905892
DNA replication proteins [BR:vri03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    117905892
  DNA Replication Termination Factors
   ELG1-RFC complex
    117905892
Chromosome and associated proteins [BR:vri03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    117905892
DNA repair and recombination proteins [BR:vri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     117905892
  Check point factors
   HRAD17(Rad24)-RFC complex
    117905892
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_16 AAA_22 AAA_assoc_2 AAA_11 AAA_14 DNAX_ATPase_lid ATPase_2 AAA_5 AAA_30 AAA_24 AAA_7 DUF815 RuvB_N bpMoxR AAA_19 ResIII nSTAND3 AAA_3 DUF3086 AAA_28 TIP49 TniB SLFN-g3_helicase AAA_2 AAA_25 NB-ARC Mg_chelatase RNA_helicase
Other DBs
NCBI-GeneID: 117905892
NCBI-ProteinID: XP_034674650
LinkDB
Position
18:complement(2659399..2667168)
AA seq 360 aa
MAEAVAVMDIDEEDNHLLKPNKGKSVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVDT
IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRGIDVVRQQ
IQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKI
IPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQ
STHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVDVV
REVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSLIASFTRARSALVAAAK
NT seq 1083 nt   +upstreamnt  +downstreamnt
atggcggaggcagtcgcagtaatggacatcgacgaggaagacaaccatttgctgaaacct
aacaagggcaagtctgtcgttgtcggaggtccgccggaccgcaaagcaactccgtgggta
gagaagtaccggccacagtcccttgccgacgttgccgctcatcgcgacattgtcgatacc
atcgataggctcacgagtgagaatagattgccccatctactactgtatggacctcccggc
acgggtaaaacctcaactattctcgcagtcgctcgcaagctgtacggagaacagttccat
aatatgattctcgagttgaatgcttccgatgatcgtgggatagatgtggtgcggcagcag
atccaagattttgctagcactcagagcttctcctttggtgcaaagtcgtccgtgaagttg
gttctattggatgaggcagatgctatgacaaaggatgcacagtttgccttgcgccgggtg
attgagaagtacacaaagaacactaggtttgcactaatttgtaatcacgtcaacaagatt
attccagcgctacagtcaaggtgtactcgatttcggtttgcccctcttgatgcagttcat
gttactgagcgacttaaacatgttataaatgctgaaaaacttgatgtatctgagagtggc
ttagcagcacttgtacggctgagcagtggtgacatgagaaaggctttgaacattttgcag
tcaacgcatatggcttctcagcagataacggaggaagctgtctatctgtgcactggaaat
ccattgcctaaagacattgagcaaatttcttactggctgctgaatgaatcatttgcagct
agttttgatcgaatatctgaagtcaagatgaggaaaggattagccttagtagatgttgta
agggaggtgacaatgtttgttttcaagatcaaaatgccatcagatgttcgagttcaatta
atcaatgatttagctgacattgagtacaggttgagttttggttgcaatgataagttgcag
cttggatcacttattgcttcatttacacgggctcgatcagcgttggttgctgctgcaaag
tag

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