Vitis riparia (riverbank grape): 117905895
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Entry
117905895 CDS
T07274
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
117905895
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
117905895
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
Motif
Other DBs
NCBI-GeneID:
117905895
NCBI-ProteinID:
XP_034674653
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Position
18:complement(6309378..6315745)
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AA seq
700 aa
AA seq
DB search
MAQSQKDGNNAFSPVQETHSKHLLINPPTHFSRHIRIPKQKSTASWSQNPGFCCAQSMSP
LGVQLYIQDRHVVMDNGILQVTLSNPGGIVTGIRYSAIDNLLEVLNDETNRGYWDLVWSV
PGSAGIFDVIKGTTFRVIVQNEEQVEISFTRMWDPSLEGKLVPLNIDKRFIMLRGSSGFY
SYAIYEHLKEWPAFTLAETRIAFKLRKDKFHYMAMADNRQRFMPLPDDRLPGRGQPLAYP
EAVLLVNPVEPEFKGEVDDKYQYSCDNKDNRVHGWVCLEPPVGFWQITPSDEFRTGGPVK
QNLTSHVGPTTLAMFHSAHYAGEPLVPKFGADEPWKKVFGPVFIYVNSVFGDGDPFWLWE
DAKEQMTIEVQSWPYSFPASEDFPSSDQRGNVSGRLLVQDGYISDDYILASCAYVGLAPP
GDVGSWQRECKDYQFWTQADLGGYFCINDIRPGDYNLYAWVPGFIGDYKLDAVITITPGC
DVFVGDLLYEPPRDGPTLWEIGIPDRSAAEFYTPDPNPTYVNKLFVGHPDRFRQYGLWER
YAELYPDGDLVYTIGVSDYTKDWFFAQVTRKKDNNTYQGTTWQIKFTLDTVDQIGTYKLR
VAIASATLSELQVRVNDPKANPPHFTSGLIGRDNTIARHGIHGLYWLYSVNVLGNLLVEG
ENTIFLTQPRSTSPFQGILYDYIRLEAPPSPDSNSNKKLA
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaagtcaaaaagacgggaacaatgctttctctccagtccaagaaacccactcc
aaacacttgttaataaaccctcccacacatttctctcgacatattcgcattccaaaacag
aaatccactgcttcctggagccagaatccgggtttttgttgtgcccaatccatgtcgcct
ctgggagtgcaactgtatattcaagatcgtcatgtggtaatggataatggcatccttcaa
gttacattatcaaatccagggggaattgtcactgggatccgatatagtgccattgacaat
ctgcttgaagttcttaatgatgaaactaacagaggttactgggaccttgtttggagtgta
ccaggaagtgctggaatatttgatgtgattaagggaacaacttttagggtgatagtgcaa
aatgaagaacaagtagagatctcattcacaagaatgtgggatccctcacttgagggcaag
ttggtaccattgaatatagataaaaggtttataatgcttcgaggttcctcaggcttctac
tcctatgccatttatgagcacttaaaggaatggcctgctttcacccttgctgaaactagg
attgcattcaagctcagaaaagacaagtttcactacatggccatggcagataacaggcaa
cggttcatgcccttgccagacgataggttaccaggacgaggccaacccttggcctaccca
gaagcagttttactagtcaaccctgtggagccagaattcaaaggagaggtggatgacaag
tatcaatactcttgtgataacaaagataaccgggtccatgggtgggtatgccttgaaccg
ccagtggggttctggcaaattacacccagtgatgagtttcgaactggtggacccgtcaaa
cagaatctaacctcacatgtgggccctacaacccttgcaatgtttcacagtgctcattat
gcgggagagcccctggtgcccaaatttggagctgacgagccatggaagaaagtttttggc
ccagtttttatctatgtcaattctgtttttggtgacggtgacccattttggctatgggaa
gatgccaaggaacagatgacgattgaagtccaaagctggccctacagcttcccagcctca
gaggattttccatcttcagatcagcggggcaatgttagtggcagattactagtccaagat
gggtatatcagcgatgactatatattagcaagctgtgcttatgtcggattggcgccacca
ggagatgttggatcatggcaaagagaatgcaaggactaccaattctggacccaagccgac
ctgggaggctatttctgcattaatgatattcgacctggtgactataatctttacgcatgg
gtcccgggttttattggggattataaattagatgctgtcattaccataaccccaggctgt
gatgtttttgtgggtgatcttctatatgagcctccaagagacggacctacattgtgggaa
ataggcattcctgatcgttctgccgcagagttctacactcctgatccaaacccaacttat
gtcaacaaactatttgtcggtcatcctgacaggtttaggcagtatggattatgggaaaga
tatgcagaattatatcctgatggtgatttagtttacacaattggtgtcagtgactatact
aaagattggttctttgctcaggtcaccaggaagaaggataacaacacatatcaaggaact
acatggcaaattaagttcacactcgacaccgtggatcagatcggaacctacaagctgaga
gtggcaattgcctcagcaacactttccgagttgcaggtccgggtcaatgatccaaaagca
aatcctcctcattttacaagtgggctaatagggagggacaacacaattgcgagacatggc
attcatgggctctactggctttatagtgtgaatgtactggggaatctgctcgtggaaggt
gagaataccattttcctcacgcagccaaggagtaccagccctttccaggggatcttgtat
gactatattcgtttagaagctcctccgtctcccgattccaattccaacaagaagcttgct
taa
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