Vitis riparia (riverbank grape): 117905955
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Entry
117905955 CDS
T07274
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117905955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117905955
Spliceosome [BR:
vri03041
]
Complex A
U1 snRNP components
U1 related factors
117905955
Complex B
117905955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
117905955
NCBI-ProteinID:
XP_034674740
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All DBs
Position
18:7079426..7119540
Genome browser
AA seq
1030 aa
AA seq
DB search
MANNPQSSGAQPLRPPAVGSLGPQNFGPPLSMQFRPAVPGQQGHPFIPAASQQFRPIGQN
ISSPNMGGPSGQNQPPQFSQAMQQLPPRPNQPGPMAPSSQPIPMPYIQQNRPLTSSSPQP
NQTAPPLNSHMPGLAGPGMPFSSSYTFAPASFGQPQSTINASAQFQPISQMHAPVGGQPW
LSSGSQSGALVTPVHQAGQQPSVTADIPAGNVPNPTHQSSSDWQEHTSADGRRYYYNKKT
RLSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTMPEELKLAREQAE
KSVSQETQSEMGTTSNEPAVVAVSLAETPSTASVSVSSTTSSTISGMTSSPVPVTPVVAV
VNPPPVVVSGTSAIPIAQSAVTTSAVGVQPSMGTPLPAAVSGSTGVAAAFINPNATSMTS
FENLSADATNGASMQDIEEAKKGVAVAGKINVTPLEEKTLDDEPLVYATKLEAKNAFKAL
LESANVESDWTWDQAMKAIINDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRMRQKKA
REEFTTMLEECKELTSSIKWSKAVDMFQDDERFKAVERSRDREDLFENFVMELQKKERTK
ALEEQKRNRMEYRQFLESCDFIKVNSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDL
EREEEEQRKIQKEQLRRAERKNRDEFRKLMEEHVAAGTLTAKTHWRDYCMKVKDSSPYLA
VASNTSGSTPKDLFEDVAEELEKQYHEDKARIKDAMKLSKVTIASTWTFGDFKAAILDDV
GSPNISDVNLKLVFEELLDRIKEKEEKEAKKRQRLADDFNDLLRSKKEITASSNWEDCKP
LFEESQEYRSIGEESFGREIFEEYIAHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKE
RKEKDRDREREKGKERSRKDETESENVDVTDSYGYKEDKKREKDKDRKHRKRHQSAVDDA
SSDKEEKEESKKSRRHGSDRKKSRKHAYTPESDTESRHKRHKREHRDGSRRNGGYEELED
GELGEDGEIR
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatcctcaatcttctggggcacagccacttcggcctcctgcagttggatcc
ttggggcctcaaaattttggtccaccattatctatgcagtttcgacctgcggttccggga
caacaaggacatccgttcattccagcagcttctcaacaatttcggccaattggacaaaat
atttcttcaccaaatatgggagggccttctggtcaaaatcagccgccgcagttttctcaa
gctatgcagcagttaccacctaggccaaaccagcctggtcccatggcaccttcatcacag
ccaattcccatgccatacattcagcaaaacagacctcttacttccagctcgccgcagcct
aatcaaactgctccccctttaaatagtcatatgcctggtctggctggcccaggaatgcct
ttctcatcatcgtatacttttgcaccagcttcttttggccagccacaaagtactattaat
gcatcagcgcagtttcaaccaatatctcaaatgcatgcacctgttgggggacagccttgg
ttgtcatctggaagtcagagtggtgccctagttacaccggttcatcaggctggccaacag
ccttctgttactgctgacattccagcgggaaatgttcctaacccaactcatcaatcctca
tctgattggcaagagcacacatcagctgatggaagaagatattactacaacaagaagaca
agactttctagttgggaaaagcctttggaattaatgactccaattgagagggctgatgcg
tcaactgtttggaaggaattcacaactccagaaggaaggaaatattattacaacaaggtt
acaaagcaatctaaatggacaatgcctgaagaattgaagttggctcgagaacaggctgaa
aaatcagttagccaggaaactcaatctgaaatgggtacaacttccaatgaacctgctgtt
gttgctgtctccttggccgaaacaccatctactgcatcagtttcggttagctctaccact
tcttcgacaatatctggaatgacttcaagcccagttccagttacacctgttgttgcagtt
gttaaccctcctcctgtggtggtttctggaacatcagccattccaattgcacaatctgct
gtaacaacaagtgcagttggagttcagccttctatgggaactcctttacctgctgctgtt
tctggaagtactggggttgctgctgctttcatcaatcctaacgccacatcaatgactagc
ttcgagaatctatcagctgatgctacaaatggagcttctatgcaggatatagaggaggca
aaaaaaggagtggcagttgcaggaaaaattaatgtgactccgctagaggagaaaacactt
gacgatgaacctttggtatacgctactaagctggaggcaaaaaatgcattcaaagcgctc
ttggaatctgcaaatgttgagtctgactggacttgggatcaggcaatgaaagcgataatt
aatgacaagagatatggtgccctgaaaacacttggtgagcggaagcaagcatttaatgaa
tacttgggtcaaaggaaaaaaattgaggctgaggagaggcgcatgaggcagaaaaaagcc
cgggaagagtttacaacaatgctggaagagtgcaaggaactcacatcatccataaaatgg
agcaaagctgtagatatgtttcaagatgatgaacggttcaaggctgttgaacggtctagg
gatcgtgaggatctttttgaaaacttcgtaatggaacttcagaaaaaggaaaggacaaag
gcgcttgaggagcagaagcggaataggatggagtacaggcaatttcttgaatcttgtgac
tttattaaggtgaacagccagtggcggaaagttcaagatcgcctggaggatgatgaaaga
tgctcccgacttgaaaaaattgatcgcttggagattttccaggaatatattcgtgaccta
gagagagaagaagaggaacagaggaagatacagaaggaacaattgaggcgtgctgagaga
aagaaccgagatgaatttcggaagctgatggaagagcatgttgctgctggcactctgaca
gccaaaactcactggcgggattactgcatgaaggttaaagattcgtcaccgtatctggct
gttgcatccaacacctctggttcaaccccaaaagatctgtttgaggatgttgctgaagaa
ttagagaaacagtatcatgaagacaaagctcgtataaaggatgcaatgaagttaagcaaa
gttacgattgcgtcaacgtggacatttggagacttcaaggctgctattttggatgacgtt
gggtccccaaacatttcagatgtgaacttaaagcttgtatttgaggagctacttgataga
ataaaggagaaggaagagaaagaagctaaaaaacgtcaacgtcttgctgatgatttcaat
gatctgttgcgctccaaaaaggagataactgcgtcttctaattgggaagattgcaaacca
ctttttgaagaaagccaagaatacagatcaattggggaagaaagctttgggagggaaatc
tttgaggaatacattgcacacttacaggagaaagccaaagaaaaggaacgcaagcgagag
gaggaaaaggccaaaaaagagaaagagagagaggagaaagagaaaaggaaggagaaagaa
aggaaagagaaagacagagatcgtgaaagggaaaagggaaaggaacgatctaggaaggat
gaaacagagagtgaaaatgtagatgtaactgacagttacggctataaagaagataaaaaa
agggaaaaggacaaagatagaaaacatcgaaagcgtcaccaaagtgctgttgatgatgca
agctctgataaggaagagaaagaggagtctaagaaatctagaagacatggaagtgatcga
aaaaaatcaagaaagcatgcatacactcctgaatcagacactgaaagcaggcataaaaga
cacaagagagagcaccgggatggttcccgaagaaatggaggttatgaagaacttgaagat
ggggagcttggtgaggatggggaaattcggtag
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