Vitis riparia (riverbank grape): 117905978
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Entry
117905978 CDS
T07274
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03440
Homologous recombination
vri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117905978
03460 Fanconi anemia pathway
117905978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vri03400
]
117905978
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117905978
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
117905978
FA (Fanconi anemia) pathway
Downstream FA components
117905978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Pex19
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
117905978
NCBI-ProteinID:
XP_034674781
LinkDB
All DBs
Position
18:770605..782977
Genome browser
AA seq
1303 aa
AA seq
DB search
MGSATPAKNPKNVYHIGGIAVEFPYQPYGSQLAFMGRVISTLDRAQRDGHCHALLESPTG
TGKSLSLLCSALAWQKNYRPKNMNGDVSHSKPDPEALSDPLGHGGGFVPETEPSSIPAPE
NSEPASAANGKNKKKKRKPTIFYASRTHTQISQVIREYRKTAYRVPMAVLASRKHYCTNR
KINAKANIDEECKLLVRDQDFGCPEFKNMHKVKGHPSLQKGGCHEAHDIEDLVKVGQVVK
GCAYYAARDMADNAQLVFCPYNYIINPVIRGAMELDIKGAILILDEAHNIEDMARDAGSV
DVEEDVLHKLQTELGQLCLADAMIYQPLYEMTQDIISWIDRKKNTLEKREFQHYFSCWTG
DKALRELQEANISQQSFPILQECARKAIKAAIDIESKVAHLSGMSVITLEGLYSALSYFF
SENGLHTVDYQLALQRYVKKDAGSVAGSWTCTFSLWCLNPAVVFRGIADLSLSVILTSGT
LSPVHSFSSELGVQFGTCLEAPHVIDIESQLWAAIISTSPGNYPLNASYKTADAYAFQDA
LGKSLEEIFKIVPGGTLVFFPSYKLMEKLCSRWRETGQWSQLNEQKFLFVEPRGGSQDDF
EPILKAYYESVCRGTKPTLGRKRRTKKMDLSQSDEKESQDNSKKKGAAFLAVFRGKVSEG
IDFSDENARAVIIVGIPFPNVHDIQVAQKKKYNDMYKSSKDLLSGNEWYCHQAFRALNQA
AGRCIRHRFDYGGIILLDERFREDRNTAYISKWLRKSIKQYESFDMSLERLKSFFIDAKE
QVGDKAVNVLQSAETNVQEILSMDQIIGSTRKKNQKLKKPDHGVQKVVSNNTRVTKRTAR
ICHSPTTEYNTFFHQQRSPGNTKFQKFVLKDEEGFSSCKEYIDLESSPQKDSRCSKATSP
ASSHDGPEVSIVKETPGVDGNITQTSPLSFSKDENSSSTIIQASTDFPGQSLFHSMSYTN
SSGPPSRAMCSLAVTPERDFIANNSNMMPETESPLNLSVNSHAQKRRKSMILPSVNPTQA
EHSDAPDAKTPGHMGNSMATRDANRRIEFGFGSKFSEDKLKKSNIPQLLTMNHCDVSSVS
SCCSMDKQLQIFCSLCRNPLGLPENDLYVMCSLTSSSKVHLASLLRGSLESLAVNTSTSI
PVVVSDSSSVNQRLCNKTLGGAQEHGVWCEEDGCVFNTIYCPFCSTPNNCLGVQIMATNA
SNVELLNKILFYFDRLEIKNPEASTDKGIKNPESWEDKDLSPPSGSNSDEVSELDPFEKF
SYKPQEPQQNSNGWRTTKSKLRLPKSSPLSNSRSQCEPRQDHM
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgggctctgcaactcctgcgaaaaacccaaaaaatgtatatcacatcggaggaatcgca
gtggagtttccataccaaccgtacgggtcgcagctagcgttcatggggcgagtcatctca
accctagatcgagcccagagagacggccactgtcacgcgttgctcgagtctccgaccggc
actggaaagtcactttcgcttctttgctcagcgctcgcttggcaaaagaactatcggccg
aagaatatgaacggcgatgtttctcattcgaagcctgatccagaggcgttgtcggatccg
cttggacatggtggtggatttgttccagaaacggagccttcgagcattccagcaccagag
aattcagagccagcttcggctgcgaatggcaagaataaaaagaaaaagagaaagcctacc
atattttatgcatcgaggacacacacacaaatctctcaagtgatccgtgaatacaggaaa
acagcatatcgtgtgccaatggcagttttggcatcacggaaacattactgcacaaacaga
aaaataaatgcaaaagcaaatattgatgaagaatgtaagctgctagtgagggaccaagat
tttggatgcccagaattcaaaaatatgcataaagtcaaaggtcatccatcccttcagaaa
ggaggctgccatgaggcccatgatattgaagatcttgtgaaagttggacaagttgtaaaa
ggttgtgcatattatgctgcacgagatatggcggataatgcacaattagttttctgccca
tacaactacatcattaatccagtcattcggggagcaatggagctcgacatcaaaggagcc
attttaattcttgatgaagcccataatatagaggacatggctcgtgatgctggtagtgtg
gatgttgaagaggatgttctgcataaactgcagacagaactagggcaactctgtctagct
gatgcaatgatttaccaacctttatatgaaatgacacaggacatcataagttggattgac
cggaagaaaaataccttggaaaaacgtgaattccagcattatttctcttgttggactggt
gataaggctttaagggagctgcaagaagctaatatttctcagcagagctttccaatcttg
caagaatgtgccagaaaggcaatcaaagctgctatagatatagagtcaaaggtagctcat
ttgagtggcatgtcagtgattacactggaagggttgtattctgcactgagttacttcttt
tctgaaaatgggcttcacactgttgattaccagcttgctttacaacgatatgttaaaaaa
gatgctggaagtgttgctggaagctggacatgtacttttagtttgtggtgcttgaatcct
gctgttgtcttccgaggcattgctgatctttctttgtcagtaatcctgacatctgggacc
ctttcaccagtgcactcattttcatctgaacttggagttcagtttggaacatgtctggag
gctccgcatgtaatagatattgaatcacagctgtgggctgccataatctccactagtcca
ggtaattatccattgaatgcaagttataaaacagctgatgcatatgcgttccaggatgca
cttggaaaatctttggaggaaattttcaagattgtcccgggtggcactcttgtgttcttc
cctagttataagcttatggagaagctgtgtagtcgatggcgtgaaacaggtcaatggtct
caactaaatgaacagaaatttctttttgttgagccaagaggaggaagtcaagatgatttt
gagcctattttgaaggcttattatgagtcagtttgtcgaggaaccaagcctactcttggg
agaaagagaagaactaagaaaatggatcttagtcagtctgatgaaaaggagtcccaagat
aattctaagaagaaaggagctgcctttcttgcagttttccgaggaaaggtttcagaagga
attgacttttctgatgaaaatgctcgagctgttatcattgttggcataccctttccaaac
gtccatgatattcaagttgcacagaagaagaaatacaacgacatgtataaatcatccaaa
gatctcttgagtgggaatgaatggtactgccaccaagcctttcgagccctaaatcaggct
gcaggccgttgcatacgacataggtttgactatggtggcatcatcttattagatgagcgt
tttcgagaagatagaaatacagcatacatttcaaagtggctaaggaaatccattaaacag
tatgagagctttgacatgtcactagagagattaaaatcctttttcatagatgccaaggaa
caggttggagacaaggctgtgaatgtattacagagtgctgaaactaatgtgcaagaaatc
ctttctatggatcagatcattgggtccaccagaaagaaaaatcagaagttgaaaaagcct
gaccatggtgtacaaaaagtagtttcaaacaatacaagggttacaaaaagaactgctcgg
atatgtcattctccaactacagagtataataccttttttcaccaacaaagatctccaggc
aatactaagtttcaaaaatttgtgctaaaggatgaggagggtttcagcagctgcaaagaa
tatattgacctagaaagcagtcctcagaaagactcaaggtgttccaaggctacatctcca
gcatcctcccatgacggtccagaagtatccattgtcaaagaaacccctggtgtggatggt
aatatcactcaaactagtccgctgtccttctccaaggatgaaaactccagttcaaccata
atccaggcctctactgactttccaggccaatcattattccattcaatgtcctacactaat
tctagtggacctccttccagagccatgtgttcattggcggtcactcctgaaagagacttc
attgcaaacaactctaacatgatgccagaaacagaatcacctttgaatttgagtgtaaat
tcccatgcccagaaaagaagaaagtcaatgatattgccatcagttaaccctacccaagca
gagcactcagatgctcctgatgccaaaacacctggccatatgggaaactccatggcaact
agagatgcaaatcgtagaattgaatttggttttgggtcaaaattttcagaagacaaattg
aagaagtcaaacattcctcagctgctcactatgaatcattgtgatgtgtcgtctgtgtca
tcatgttgcagtatggacaagcaactacaaattttttgctcactctgcagaaatccattg
ggtcttcctgagaacgatttgtatgttatgtgttcattaacttcatcatcaaaagttcat
ttggcatctcttctgagaggaagcttagaatctttagctgtcaatacatccacaagcatt
cctgtggtggtgtctgacagttcatcagttaatcagcgcctctgcaataaaacccttgga
ggtgctcaagaacatggtgtttggtgtgaagaagatgggtgtgttttcaacaccatctac
tgccccttctgcagtacacccaacaattgtcttggtgtgcagataatggccactaatgcg
tcaaatgttgagttacttaacaagattttgttttactttgatagattggaaattaagaat
cctgaggcatcaacggacaagggaattaagaatcctgagtcatgggaggacaaggattta
tcacctcctagtggctccaacagtgatgaagtttcagaactggatccttttgaaaaattt
tcatacaagcctcaagagcctcagcagaactccaacggctggaggactacaaaatcaaag
ctaagactaccaaagagtagcccgctttctaattcaagaagccaatgtgaacccagacag
gatcatatgtag
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