Vitis riparia (riverbank grape): 117906608
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Entry
117906608 CDS
T07274
Name
(RefSeq) N-glycosylase/DNA lyase OGG1 isoform X1
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117906608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vri03400
]
117906608
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
117906608
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
117906608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
RecR_HhH
HHH
HHH_5
HHH_8
Motif
Other DBs
NCBI-GeneID:
117906608
NCBI-ProteinID:
XP_034675599
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All DBs
Position
18:2561466..2581203
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AA seq
462 aa
AA seq
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MHSLKLPQTMKRRRPIPQPPSTPPTPTLLKTLASNSKPTSNSSKKPRILIKTPQTPPPTT
PISPKWVPLNIAKSELSLALTFPTGQTFRWKQTTPLQYTGVIGSHLISLKHLQNGDVAYL
IHQSPSEENARSALLDFLNVGISLSEMWEVFKASDSRFAELAQYLGGARVLRQDPLECLI
QFLCSSNNNIGRITKMVDFVSSLGNYLGSVGGFDFYEFPSLDRLSMVSEEDFREAGFGYR
AKYIIGTVKALQSKSGGGIEWLASLREMDLQEVVDALSTLPGVGPKVAACIALFSLDQHH
AIPVDTHVWQIATRYLIPELAGSRLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPSQ
KTILPPKFWVTEENKDTNIKASTTETILWTLHLCTCVPTRWRTLQRDQMAKQARAELSHH
SHSYSSRTSHQCTHRVEQLHPPCPRSQQISHAHLSHMGNRVS
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcactcactgaaactgccgcaaacaatgaagagaagaagacccattccacaaccgcct
tcaacccctccaaccccaaccctcctcaaaaccctagcttccaacagcaaacccacttca
aactcctccaagaaacccaggatccttatcaagaccccacaaacgccaccacccacaacc
ccaatatcacccaaatgggtgcctctcaatattgccaaatcggagctctcccttgcactt
accttcccaactggccaaaccttcaggtggaagcaaaccacccctcttcagtacactggc
gtcattggatcccacctcatctccctcaaacaccttcaaaacggcgacgttgcctacctc
attcatcagagcccgtcggaggagaatgccaggtcggctttattggattttctcaatgtg
ggtatttctctgagcgaaatgtgggaggtgttcaaggcttcggattcgaggtttgcggaa
ttggcacaatatttgggtggtgcaagggtgcttaggcaggacccacttgaatgtttgatt
cagtttttgtgttcatcgaataacaatattgggaggattaccaaaatggtggattttgtt
tcgtcgttgggaaattatctggggagtgttgggggttttgatttttacgagttcccatct
ctggatcggctatccatggtttcagaggaagattttagagaggctggcttcggttacagg
gccaaatacataattggcactgtaaaagctttgcagtcaaagtctggtggaggcatagag
tggcttgcttcccttcgtgaaatggaccttcaagaggtggttgatgccctttccactcta
cctggtgttggtcccaaggtggcagcatgcattgctctcttttcactggatcagcatcat
gccattcctgttgatacgcatgtgtggcagattgctaccagatatctcatccctgagctt
gcaggttcccgtctgacacctaagctttgcagtcgtgtggcagatgcatttgtgagcaaa
tatgggaaatatgctggttgggcacaaactctactcttcattgctgaattaccttcacaa
aagacaattctaccaccaaaattttgggttactgaggagaataaagacactaacataaaa
gctagtacaacagagaccattttgtggaccctgcatttatgcacatgtgttcccactcga
tggcgaacactccaaagagatcaaatggcgaagcaagctcgagctgaactatcccatcat
tctcactcatactcatcgcgaacatctcatcaatgtactcatcgtgtagaacaactccat
ccaccatgtccccgatctcagcaaatatcccatgctcatttatctcatatgggaaataga
gtgtcatga
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