Vitis riparia (riverbank grape): 117906757
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Entry
117906757 CDS
T07274
Name
(RefSeq) THO complex subunit 5B isoform X1
KO
K13174
THO complex subunit 5
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117906757
09122 Translation
03013 Nucleocytoplasmic transport
117906757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117906757
03041 Spliceosome [BR:
vri03041
]
117906757
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117906757
Spliceosome [BR:
vri03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117906757
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
117906757
NCBI-ProteinID:
XP_034675825
LinkDB
All DBs
Position
18:8734767..8739999
Genome browser
AA seq
816 aa
AA seq
DB search
MEVTMDDKNETEDALMAPEPRIEKSAYDMLQQSKASMEEIVGKMLSIKKEAQPKSQLREL
VTQMFLHFVVLRQANRSILLEEDRAKAETERAKTPVDFTTLQLHNLMYEKNHYVKAIKAC
KDFKSKYPDIELVPEEEFFRDAHEDIKGTVMSNDSAHNLMLKRLNFELFQRKELCKLHEK
LEQRKKGLLETIANRKKFLSSLPSHLKSLKKASLPVQQQLGVLHTKKLKQQHSAELLPPP
LYVIYSQFTAQKEAFGENIDMEIVGSVKEAQAFARQQANKDSGVSTNVDNSRLEDDAPDE
EDDGQRRRKRPKKVPSKENLDQAGVYQVHPLKIILHIYDDEVSDLKSAKLITLKFEYLLK
LNVVCVGIEGSHEGPENNILCNLFPDDTGLDLPHQSAKLFIGNARAFDERRTSRPYKWAQ
HLAGIDFLPEVSPLLTCSETPSSETAKNATVVSGLSLYRQQNRVQTVVQRIRSRKKAQLA
LVEQLDSLMKLKWPTVSCKSIPWALHTPLCNFNGWSSVGSSPNQASALSVTSKDQVQETL
DIDMDRKSGTPREEVESAREDGELPSLVPVASVVNEAKLTPSRGSELEHSRRLALISKSI
VPPTNKIKSLSFKKHDDDSDLLLESDSDLDEPAQIEPEAENIASDGCYVMIENSWVDYGV
REFCLVLTRKMDANERNVKLEAKIKISMEYPLRPPLFAISLYTVSPVESDSEIEGSEWYN
ELRAMEAEINLHILRMLPLDQENYILAHQVCCLAMLFDYHMDEASSSSEKIKSTSVVDVG
LCKPVTGRLLARSVRGRDRRKMISWKDMECTPGYPY
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgacaatggatgacaagaatgagacagaagatgcgctgatggcaccagagccc
aggatcgagaagtcggcgtacgatatgctgcagcaaagcaaggcttcaatggaggagatc
gtgggcaagatgctttctatcaagaaagaagctcaacccaaatctcaactccgcgaactc
gtcactcaaatgttcctccacttcgtcgttctccgccaggcgaatcgatctatcttgctg
gaagaagaccgtgcgaaagctgaaacagagcgtgccaagaccccggtggacttcacgaca
cttcagcttcacaatttgatgtatgagaaaaaccactatgtgaaagccatcaaggcttgc
aaagatttcaagtccaagtatcctgacattgaactggtgcccgaggaagaatttttcaga
gatgcacatgaggatattaaaggcaccgtgatgtcaaatgacagtgctcacaatctgatg
ctcaagaggctcaattttgagctcttccagcgtaaggaactgtgcaagcttcatgaaaaa
ctggaacagaggaaaaaaggtcttttggagactattgcaaatcggaagaagttcttatcg
agtctcccttcacaccttaagtctcttaagaaagcatctttgccagtacaacagcaatta
ggggttttgcatacaaagaaactaaagcagcagcactcagcagagttgcttccacctcct
ctctatgtaatttactcacagttcacagcacaaaaagaagcatttggagaaaatatagat
atggagatagtaggaagtgtgaaggaagctcaagcttttgcccgtcagcaagcaaataag
gattctggtgtttctaccaatgtagacaattccaggttagaggatgatgcacctgatgag
gaagatgatgggcagagaaggagaaagcggccaaagaaggtaccaagcaaagagaatctt
gaccaggcaggagtataccaagttcatccactgaaaatcatccttcacatatacgatgat
gaggtctctgatctaaaatctgcaaaactcattactctcaagttcgaatacttgttgaag
ttgaacgttgtatgtgttgggattgaaggctctcatgaaggacccgagaataacatcctg
tgcaatctattccctgatgacactggccttgaccttcctcatcagtcagctaagcttttt
attggtaatgcccgtgcatttgatgaaagaagaacttctcgtccatataagtgggcccag
catttggcaggaattgattttttgccggaggtgtcacctttgcttacttgcagtgaaacc
ccaagcagtgaaacagctaaaaatgctactgttgtttctggcctttcactataccgccag
cagaatagggttcagacagttgtgcaaaggattcgctctcggaaaaaggctcagctggct
cttgtggagcagcttgattctcttatgaagcttaaatggcccactgtgagttgcaaaagt
attccctgggccctgcatacccctttgtgcaatttcaatggttggtcgtctgtagggtcc
tctcctaatcaggcttcagctttgtctgtcaccagtaaggatcaagttcaggagactttg
gacatcgatatggataggaagtctggtacaccaagggaagaggtagagagtgcaagggaa
gatggggaacttccatctttggttccagttgcatctgttgtaaatgaggctaaactcact
ccctcgagaggatctgaacttgagcattccagacgtctagctttgatttcaaagagcatt
gtgcctccaactaacaagataaaatcactgagcttcaagaaacatgatgatgattcagac
ctcttattagaatctgatagtgatctcgatgagcctgcacaaattgagccagaggcagaa
aatatagctagtgatggatgctatgtgatgatcgagaactcatgggtggactatggtgtc
agggaattttgccttgttctaacaaggaaaatggatgcaaatgagaggaatgtaaagtta
gaggcaaagatcaaaatcagtatggagtatcctcttaggcctcccctttttgcaatcagt
ctatacactgtatctcctgttgaaagtgattctgaaattgaaggatcggagtggtacaat
gaactgcgtgccatggaagcagagatcaatcttcacatattaaggatgctgcctttggat
caagagaactatatcttagctcatcaagtgtgttgtcttgcgatgttgtttgactatcac
atggatgaagcatcttcatcttctgaaaaaataaaaagtacttccgtggttgatgttggt
ctatgcaagcctgttacaggtaggcttcttgccagatcagttagagggagggatcgtagg
aagatgatctcctggaaagatatggaatgcactcctggctatccttactag
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