Vitis riparia (riverbank grape): 117906813
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Entry
117906813 CDS
T07274
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117906813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117906813
03036 Chromosome and associated proteins [BR:
vri03036
]
117906813
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117906813
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117906813
PBAF complex
117906813
GBAF(ncBAF) complex
117906813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
117906813
NCBI-ProteinID:
XP_034675918
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Position
18:complement(2532782..2550672)
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AA seq
794 aa
AA seq
DB search
MPASPSDARTKWRKRKRDPHVSRRQKHEEDEEDDDDVDDELDADADDDNEQQPQHGPQSG
AVPDPAPLMREVLSDGAVRISDFPSVVKHTVNRPHSSVLAIVGTERAIQFGDTRNQQSPM
FLENISHGQLQALSAVPADSPSLATSDQERSDGGGYVVAPPQIMEGRGVIKRFWNGRVHA
VPMHSDWFSPNTVHRLERQVVPHFFSGKSPDHTAELYMECRNLIVAKYMEYPEKRLSVSD
CKGLVAGIQEEDLTRIVRFLDHWGIINYCASSVPNREPWSSTSYLREDSNGEVHVPSAAL
KSIDSLIKFDKPKCRLKAAEVYSSLSCNGDEDSDLDCKIRERLSDNRCNYCSRPLPIGYY
QSQKEVDVMLCTDCFYEGRFVTGHSSIDFIRLDSTKDYGDVDSESWSDQETLLLLEAMES
YNENWNDIAEHVGTKSKAQCILHFIRMPMEDGLLENIEVPSMPTLSNSLNKVDQERSHSN
SNGNLAGSCLPGLDSYSRLPFANSGNPVMSMVAFLATAVGPRVAAACAHASLIALSEENA
LAAASGFIIPPEGSGHGNRMKEGGPHGELTNSSQHQDGNIAIQGSWGQNDAEVASLPVEK
VRAAAKAGLAAAAMKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMKEC
EQVERARQRFAAERARIISTRFGPTGVTSPMNLPGVAPALVSNNTGNNRQQIISASPSQP
SISGYGNNQQMHPHMSFMPRQPMFSFGPRLPLAAIQPSSSTPSPNAMFNNSGSSQPTLNH
PMMRPVSGTSSGLG
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttctccctctgacgctcgcaccaaatggagaaagaggaagcgagacccccat
gtctcccgccgtcagaagcatgaggaggacgaggaagatgatgacgacgtcgacgacgaa
ttggacgccgacgcggatgacgacaacgagcaacagcctcagcatggtccgcagtccggc
gccgtacccgatcctgcccctttgatgagggaggtgctttccgatggcgccgttcgaatt
tccgacttccctagcgtggtgaagcacaccgtgaatcgtccacactcgtccgtgctagcc
attgttgggacggagcgggcgattcagtttggggacactaggaatcagcaaagccccatg
tttttggagaatatatcacatgggcagctccaggcgttgtccgccgtgccggcggatagt
ccgtctttggcgacgtcggatcaggagagatcggatggaggtggttacgtggtggcgcca
ccgcagatcatggaggggcgtggtgtgattaagcggttttggaatggtcgggttcatgct
gttccaatgcactcagattggttttcgcctaacacagtgcacagattggagagacaagtg
gttccgcattttttctctggaaagtctccagaccatacggcagagctatacatggaatgc
aggaacttgattgttgccaagtacatggaatatccagagaaaagattatcggtttctgac
tgtaagggccttgtggctggcattcaggaggaagacttgacccgaattgttcgtttcctg
gatcactggggaatcattaattactgtgcttcttctgtgccaaatcgtgagccttggagt
agcacatcctacctaagggaggattcgaatggtgaggttcatgtgccatcggctgctttg
aagtccattgatagtttgatcaaattcgacaagcccaaatgtaggctcaaggcggctgag
gtgtactcatccttgtcatgtaacggtgacgaggactccgacttggactgcaaaattcga
gagaggttatctgataatcgttgcaattattgctctcgacctcttccaattgggtattat
caatcacagaaggaggtcgatgtaatgctatgcacagattgcttctatgaagggaggttt
gtaactggtcattcaagtatagattttatacggttggattccacaaaagattatggtgac
gttgatagcgaaagttggagtgatcaggagactttactcctgcttgaagcaatggaatct
tataatgagaactggaatgacattgcagagcatgttggtaccaagtcaaaagcacaatgc
atccttcattttattcgtatgcccatggaggatggcctacttgagaatattgaagttcca
agcatgccaactttatctaattctttgaataaagttgatcaggaaagatcacattcaaat
tcaaatgggaatttagcaggatcttgtctccctggccttgattcttatagtaggctccct
tttgcaaattctggaaatccagttatgtccatggttgcctttctagccaccgctgttgga
ccacgagttgccgcagcctgtgcccatgcatccttgatagcattgtctgaggaaaacgct
ttagctgctgcttctggattcatcataccgccggaaggatctggacatggaaataggatg
aaagaaggtggtccacatggagagctgacaaattcaagtcagcaccaagatggaaacata
gcaatacaaggttcatggggtcaaaatgatgcagaggttgcttcattacctgttgaaaaa
gttagagctgctgcaaaagctggtcttgctgctgcagcgatgaaggcaaaactgtttgct
gatcatgaagaaagggaaattcagaggctttctgccaatattattaatcatcagttgaag
agattagagctgaagctgaagcaatttgcagaagtggaaaccttgttgatgaaagaatgt
gaacaggtggagagggcaagacaaaggtttgcggctgagcgagcccgcattatatcgacc
cggtttggaccaaccggagtcacttcacctatgaatcttccaggtgttgctcctgctttg
gttagtaacaacactggcaacaataggcaacaaatcatatcagcctcaccttcacagcca
agcatttctgggtacggtaataaccaacaaatgcatccacacatgtcgttcatgccgcgg
cagccaatgttttcatttggaccacgcctgccccttgcagccatacagccatcctcatca
actccttctccaaatgccatgtttaacaattcgggtagttcacagcctactctcaatcat
ccaatgatgaggcctgtatcagggactagctctggtttaggttga
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