Vitis riparia (riverbank grape): 117906907
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Entry
117906907 CDS
T07274
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117906907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vri03032
]
117906907
03400 DNA repair and recombination proteins [BR:
vri03400
]
117906907
DNA replication proteins [BR:
vri03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
117906907
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
117906907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
ECT2_BRCT0
TopBP1_BRCT0
Motif
Other DBs
NCBI-GeneID:
117906907
NCBI-ProteinID:
XP_034676071
LinkDB
All DBs
Position
18:2331819..2343378
Genome browser
AA seq
986 aa
AA seq
DB search
MMMAKSLKGANVFMSRNLVPPELFDSLHDALKLNGADVFLCCDPSRNGPNDYHIISSSDH
EKFEDLRAKGCNLLGPQCVLSCAKEHRPLPKQGFTCCLAMDGVKVLASGFDMDEKVKIGK
LVTAMGGVLHTKASSDVSFVIVKNVLAAKYKWASNILKKPIVTINWLHQCWTEHRVVPQE
SYRVLPFSGLTICVTKIPADERKEMEILIKQNGGKYSADLTRNCTHLITDAPEGDKYKVA
RRWGHIHIVTRKWFDQSIARKACVNEESYTVQGGSASSINSVRTHLTASQSQDKSNVNFQ
SASSSLAADSILQAVPCSGIGDPDLEATLSQNTCSTFLDAPIFIKEGETREPAMQDKDEN
KLDGLVADDSQTEDSDLYLSDCRILLVGFEASEMRKLVNMVRRGGGSRYMSFNEKLSHIV
VGTPSEVEKKVVRGLAATGVISVVRTIWLEDCDHEKKEVSVLRRHIAHDLLLPKDSACLN
KGAVVGIINQGKSSTVASSMPADQSLGSMNTGSRMLLEKSKQRIPEVNVNWDNFLEETAR
SAQQSMPSINDKYKKTQQKMEQYSNTLNVKDGKESRVFKGKQFRFSHSFPEDRRAEIVQW
VNQGGGDVVDDWCKQNVHFVVECHGALLPKSVNASQTTHVSSHWIRSCLEDGCLLDVSSH
ILYSPLPCQIPLPGFEKLRFCVSQYEEKDRLLLRNLCFVLGAKFVEKLTKKVTHLLCKFT
GGPKYEAACKWGIESVTSEWIYECIKQNGVVYVDSFCPKEITAHDRQAGLCIMSQYPTQA
AQMISADKGSQLPTQSHDLGDIPTQSICNRSDRFNEEARHSSVHTKRARLLEDESQKTVP
PSGAQDMDFISKMNSSGTTITAVTEETSHVVPDVAAAIEDLLEQTSKIHDLKSPGRTGCE
KHLFSSDCSPLGQDHADSHSSFDLSKHWLNRIEKKDDICNPPGDVKASTYDGFSETQTES
QVVGYEEDLSGRQMIIDRVRTRSSMC
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggcgaaatcgttaaagggcgcgaatgtgttcatgtcgcggaacctggtcccg
ccggaactctttgattcgcttcacgacgctctcaagcttaacggcgccgatgttttcctc
tgctgcgatccttcgaggaacggccctaacgattaccacattatctcatcttccgatcac
gagaaatttgaggatcttagggctaagggttgtaatttgctcgggccacaatgcgtgctt
tcatgtgcaaaggaacacaggcctcttccgaaacaagggttcacttgttgccttgcgatg
gatggggttaaagtcctcgcgtctggttttgacatggatgagaaggttaagattgggaag
ttggtgactgcaatgggaggtgttttgcatactaaagcatcttccgatgtgagctttgtg
attgtgaagaacgttttggctgcaaagtacaagtgggcttctaacattctcaagaaacca
attgttactatcaattggttacatcaatgctggactgagcaccgtgtggttcctcaggag
tcatacagggttcttcccttttctggattgacaatttgtgttactaaaattccagcagat
gaacgcaaggagatggaaattcttatcaaacaaaatgggggaaaatattctgctgacctt
accaggaattgcacacatttaataactgatgctcctgaaggtgacaaatacaaggttgcc
cgaagatggggccatatccatattgttactcggaaatggtttgatcaatctattgctaga
aaagcatgtgttaatgaggagtcctatactgttcagggtggttctgcatcttcaatcaac
tctgtaaggacacatttgacagcgtcacaaagccaagacaagagtaatgtaaatttccaa
tctgcctcatcttcattggctgcagattcaatcttgcaagctgttccatgtagtgggatt
ggagatccagatctagaagcgactctttctcagaacacatgttctacgtttttggatgct
cctatttttatcaaagagggggaaaccagagagcctgccatgcaggataaggatgaaaac
aagttagatgggcttgttgctgatgattctcaaactgaggacagtgacttgtacttatca
gattgcagaattttacttgttggttttgaagcctctgaaatgcgtaagctagtaaatatg
gtgcgcagaggtgggggctcccggtatatgtcattcaatgaaaaattgagtcacatagtt
gttggaactccttcagaagttgaaaaaaaggttgtaaggggccttgcagctacaggtgtc
atttctgtggtaaggacaatctggcttgaagattgtgatcatgaaaagaaagaagtttct
gtacttcggaggcatattgctcatgatttgctccttccaaaagattctgcttgcttgaac
aaaggagcagtggtaggcattataaaccaggggaaaagctctacagttgcatccagcatg
ccagctgaccagtcactgggaagcatgaacactggatctagaatgttattggagaaaagc
aagcaaagaattccggaagttaacgtgaattgggacaactttctagaagaaacagcgagg
tctgctcagcaaagcatgccttctataaatgataaatataagaagactcaacagaagatg
gagcaatattccaacactctaaatgttaaggatgggaaggaatcaagagtgtttaagggg
aagcagtttcgcttttcacattcttttcctgaagatagaagagctgaaattgttcagtgg
gtaaatcaagggggaggagatgtagtggatgattggtgcaaacagaatgtgcacttcgtt
gttgaatgtcatggtgctttgctacccaagtctgtcaatgcctctcaaactactcatgtg
tccagtcactggattcgatcttgtttagaggatggatgcttgctggacgtcagcagtcac
attctttattctccccttccctgccagatccctttacctggatttgaaaagcttcgcttc
tgtgtttcacagtatgaagagaaagatagattgctgttaagaaacttgtgctttgttctt
ggagctaaatttgtggagaaactgactaaaaaggtcacccatttgctatgtaagttcact
gggggcccaaaatatgaggctgcttgtaaatggggaatagaatcagttacatctgaatgg
atttatgagtgcatcaagcagaacggagttgtttatgtggactcattttgtccaaaagaa
attactgctcatgaccggcaagcaggattatgcattatgagccagtatcctacacaagct
gctcaaatgatatctgctgacaagggttcccagttaccaactcaatctcatgaccttggg
gacataccaactcaatctatttgtaatagaagtgacagatttaatgaagaggcaagacat
tccagtgttcacacaaaaagagcaaggcttttggaagatgagagtcaaaagactgtgcct
ccttctggagcacaagacatggattttatcagcaagatgaactcttctggaaccaccatc
actgcagttaccgaagaaacttctcatgttgttcctgatgttgctgctgctattgaggat
ttgttagagcaaactagtaagattcatgatctcaaatcaccagggaggactgggtgtgaa
aaacatcttttctcatctgattgttcaccccttggtcaagatcatgcagattctcattca
tcttttgacttatctaagcactggttaaacaggattgagaaaaaagatgatatttgcaat
cctcctggagatgtcaaggcaagcacttatgatggctttagtgaaacacaaacagagtct
caggtcgttggctatgaagaagacttatctggtcggcaaatgataatagacagagttcga
accagaagtagcatgtgttga
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