Vitis riparia (riverbank grape): 117907037
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Entry
117907037 CDS
T07274
Name
(RefSeq) uncharacterized protein LOC117907037 isoform X1
KO
K06100
symplekin
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117907037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117907037
03019 Messenger RNA biogenesis [BR:
vri03019
]
117907037
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117907037
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117907037
U7-dependent histone pre-mRNA processing factors
117907037
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
117907037
NCBI-ProteinID:
XP_034676261
LinkDB
All DBs
Position
18:6573269..6630659
Genome browser
AA seq
1339 aa
AA seq
DB search
MAGASRDQALALLAAANNHGDLAVKLSSLRQAKDILLAVHPSFAAELFPYLVELQSSPET
LVRKSLIEAIEEIGLKAMEHSSILVSVLLVFLRDGDSIIAKQSIVSGTNFFCSVLEELAL
QFHRHGKVERWLEELWVWMVKLKDAVLAIALGPGPFGVKILAMKFLETYVLHFTSDANDF
EKSSIEGSGRAFNISWVVGGHPVLDPASLMSDANRIIGVLLTLLQSASSLSGCLTITVVN
CLAAIARKRPHHYNTVLSALLDFDSSIEMVKGHSASVQYSLRTAFLGFLRCTCPTIMESR
DRLLRALRSMNAGDAADQVIRQVDKMMKNNERASRDARLGRDDPPSSQLSVPGDLFRKRS
MHQDNEEPTNGHGMTSKRIRYGHNMHSASHVQMSDSGQDCASANGVSPKVPLLDNDLTPV
EQMIAMICALVAEGERGAESLEILISQIHPDLLADIIVTNMKQFSKVLSSPIGFGNLPVS
GQTGSSSSPAPAAPTITMQSSVLPAQVPFSTAAATSMAHSDMSTVINLPPDSKRDPRRKN
FQDPRRLDPRRVGVPVGLQSVHMVEDTGTIQAEFDGSISLSKPPSLPLVTSVENTSTSLV
SKTEGDDKILKNALISETDQPISREELLDGAKEVDHIPEIGATSDAALSPARTIDEDSAA
PESLDIAVADGADTSPLIETDQHSPARSNTYVSEETSIDLPLPPPYVELTEDQKIRLKKL
ALERIINSYVYSRETDCSHTRMALLARLVAQIDGDEDVVVMLQKHVLLDYQGQKGHELVL
HILYHLHALMISDSVEHSSFAAVVYEKFLLAVVKSLLEKLPASDKSFSKLLGEVPLLPDS
ALKLLDDLCSSDVTDQHGKVLRDRERVTQGLGAVWSLILGRPLNRQACLNIALKCAVHSQ
DDIRTKAIRLVANKLYLLSYISENIQQYATDMLLSAVNQHISDPELSQSGSSDQRLEAET
GSLETSVSGSQISEPGTSENDPMKGSQSVQNISTVEFHQAQRLISLFFALCTKKPNLLQL
VFNIYGRAPKAVKQAIHRHIPIIIGALGPLYPELLSIISDPPEGSENLLTQVLKILTEEK
TPTPHLIAIVKHLYETKLKDATILIPMLSLLSRNEVLPIFPRLIDLPLDKFQDALANILQ
GSAHTGPALTPAEVLVAIHDISPEKDGIALKKITEACSACFEQRTVFTPQVLAKALNQMV
DHTPLPLLFMRTVIQAIDAYPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTQPHS
FRVLLQLPAPQLESALNKHANLRGPLSAYASQPSIKSSLPRSILIVLGLVNEPHMQQSHP
PSSLHSSDTSSSVHGATLT
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcttcccgagaccaagcactggctctcctcgccgctgccaacaaccatgga
gatttggccgtaaagctctcttctcttagacaggccaaagatatcttactagccgtccac
ccctcatttgcagccgagctttttccctacttagtcgagcttcagtcttctcccgaaacc
ctagttcgaaaatctctcatagaggcaatagaagagattggtttgaaagcaatggagcat
tcttctatattagtatcagtcttattagtatttttgagagatggcgattctattattgca
aagcaatctattgttagtgggacaaatttcttttgcagtgttctagaggagttggccctg
cagttccatcggcatggtaaagttgagaggtggcttgaagagctttgggtgtggatggtt
aagttgaaggatgcggtccttgccattgcgttggggcctggtccttttggggtgaagata
ctggcgatgaagtttttggaaacatatgtgctacattttacatctgatgctaatgatttt
gaaaaatcttctatagaaggaagtggacgggcttttaatatttcttgggtggttggtggt
cacccagttctagatccagcttcactcatgtcagatgcaaataggattattggagttcta
ctaacgttgttgcaatcggctagtagtctttctggctgtttgacaattactgttgtcaat
tgtcttgcggccatagcaaggaagaggcctcaccactacaacacggttctttctgcattg
cttgattttgattcaagcattgagatggtgaaaggtcattctgctagcgtccagtattcc
ctgaggactgcctttttaggattcctaaggtgtacttgtccaactataatggagtcaaga
gatagattgcttagagcactacgttcaatgaatgctggggatgcagctgatcaagttatt
cggcaagttgataaaatgatgaagaataatgagcgtgcttcacgtgatgctcggttgggc
agggatgatccgccatcaagtcagctgtctgttcctggagatctgtttaggaagaggtct
atgcatcaggataatgaagagccaactaatggtcatgggatgacttccaaacgaattcgt
tatggtcacaacatgcactcagcttcacatgttcaaatgagtgattctgggcaggactgt
gcttctgctaatggtgtctctccgaaggtgcctctgttggataatgatttgactcctgtt
gaacaaatgattgccatgatttgtgctctagttgcagaaggagaaagaggtgctgaatca
cttgaaatccttatatcccaaatccaccctgatctgttggcagatattatcgtaacaaat
atgaagcagttctctaaggtcctgtcatcaccaataggatttgggaacttgccagtgtct
ggacaaactggttcttcaagcagtccagctcctgctgctccaacaattacaatgcagtct
tcagttctcccagcacaagtgcctttttctacagcagctgcaacaagcatggcacattct
gacatgtctactgtcattaatctccctccagattctaagcgcgatccacggaggaaaaat
tttcaggatcctcgtcggctggatccacggcgtgttggagtgccggttggactacaatct
gtacatatggtggaggatactggaactattcaagctgagtttgatggttctatttctttg
agcaagccgccttcacttcctcttgtcacaagtgtagaaaatacttccacatctttggtg
tccaaaactgaaggtgatgataaaattttaaaaaatgcattgatttctgaaactgatcaa
ccaatttccagagaggagcttctggatggagccaaggaagttgaccatattccagagatt
ggtgctacttcagatgctgccctttctcctgctcgcacaattgatgaagactcggctgca
ccagagtcattggatattgcagtggcagatggagctgatacatcgcctttgatagaaact
gatcaacattctccagcacggtcaaatacttatgtgtctgaagagaccagcattgattta
cctttgcctccaccatatgttgagctgactgaagatcagaaaattagattgaaaaagttg
gcacttgaacggattatcaattcgtacgtgtattcacgggaaacagattgtagccataca
cgcatggcattacttgctcgattggttgctcagattgatggtgatgaggatgtggttgtg
atgctgcaaaaacatgttcttttggattaccagggccaaaaggggcatgaacttgtactg
cacatcctgtaccacctgcatgcgctcatgatctcagattcagttgaacactcttcattt
gctgctgttgtatatgaaaaatttcttcttgcagtggtaaaatctctgctggaaaaatta
cctgcttcagacaagtcttttagtaaactgctcggtgaagttcctcttttgcccgattct
gccctgaaattgttagatgatctctgctcttctgatgttactgatcagcatggaaaagtt
cttcgcgacagggagcgtgtcactcagggccttggtgcagtatggagtttgattttgggc
cgcccacttaataggcaagcttgcttgaatattgctttgaagtgtgctgttcattcacaa
gatgacattcgaacaaaagccatccgactggtggcaaacaaactttatcttcttagctat
atatcagaaaatattcagcaatatgcaacagatatgttgttgtcagctgttaatcagcat
atttcagatccagagctctcacaatctggttccagtgatcaaagattagaagcggagact
ggaagcctggagacatcagttagtggttctcaaatttctgagcctggaacatctgaaaat
gaccccatgaagggttcacaatctgttcagaacatctcgacagtggaatttcatcaagct
caacgccttatttctttgttttttgctttatgtacaaagaaacctaatcttcttcaactt
gtattcaatatttatgggcgtgctcctaaggctgttaagcaggcaatccatcgtcatatc
ccaattattataggggctctagggccattatatcccgaattgctcagtataatatcagat
ccaccagaaggaagtgaaaatctgctgacacaggtgctgaaaatattaactgaagagaag
acgccaaccccacacctgattgcaattgttaagcatttgtatgaaactaaattaaaggac
gccacaattcttatcccaatgctgtccttgctgtcaagaaatgaggttttacctattttt
cctcggctcattgaccttccattggacaaatttcaggatgcacttgccaatatactacag
ggttcagctcatacaggtccagcattgacacctgcagaagtgttggttgctatccatgac
attagtcctgagaaagatggcattgcactcaaaaagataacagaagcttgctctgcttgt
tttgagcaacgtacggttttcacaccacaggttttggcaaaggccttgaaccagatggtt
gatcatactccgttgcctctactcttcatgagaacagtaattcaggcaattgatgcttat
cctaccctggttgattttgtaatggagatactctccaagcttgtgagtaaacaggtgtgg
agaatgccaaagttgtgggtcgggttcttgaaatgtgtgtctcagacacagccacattct
ttccgtgtactgttacagctaccagctccacagcttgaaagtgctctgaacaaacatgct
aacctcagaggtcctctttctgcttatgctagccaaccaagtataaaatcatcattgcct
agatcaattctcatagttcttggtctggtaaatgaaccccacatgcagcaatcacaccct
ccatcgtctctgcattcatcagacacaagttcttctgttcatggagcaactctaacttga
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integrated database retrieval system
