Vitis riparia (riverbank grape): 117907103
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Entry
117907103 CDS
T07274
Name
(RefSeq) tRNA pseudouridine synthase A-like
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vri03016
]
117907103
Enzymes [BR:
vri01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
117907103
Transfer RNA biogenesis [BR:
vri03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
117907103
Prokaryotic type
117907103
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
117907103
NCBI-ProteinID:
XP_034676372
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All DBs
Position
18:1395047..1398635
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AA seq
571 aa
AA seq
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MEIQEPDPKRPKMSQTTTTSDDEDCDTTTATKKPRYKRRKIAIFFAYCGVGYQGMQKNPG
AKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYIDPPGLV
ERLNSNLPPQFRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRESVLASVGS
ENELVKCLECSERGRKVVGIMGKRSFESKVSVDDREDVEGESKNIVQLGIPSNDEAAILN
SEVQEEIKATSNNNNIDANNSISEMIKEEAAILSSEVDAEIINGENSISEPVKVGAAILK
SEAKEESMASSDNRHDGNSISQPIKEGSCFQDNGTSESTPDSRASAQNEPGVSHSEQSDK
GKNKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTI
VTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPE
VGLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKMKHIYSHIAATEHKEGVVALWLH
SLNHRNYPDLCIGDNGAASDGKNGEEETMAD
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggaaatccaggagccggaccccaaaagaccaaaaatgtcccaaaccaccaccacctcc
gatgacgaagactgcgacaccaccaccgcgaccaaaaagcccagatacaagcgccgcaag
atcgccatcttcttcgcatactgtggcgtgggctaccaaggcatgcagaaaaaccccgga
gccaaaaccatcgaaggggacctcgaagaagccctcttcttctcgggcgccgtccccgag
caagaccgcggacaccccaagcgattcgactgggctcggtccgctcgaaccgataagggc
gtcagcgcagtgggtcaagtagtctcaggccggttctacattgatccacccggcctagtc
gagcgcctgaattcgaatctccctccccagtttcggatctttgggtttaagcgagtgacg
gcgtcgtttaatgccaagaaattctgtgatcgcaggaggtatgtgtatcttattccagtg
tttgctcttgatcccagttcgcatcctgatagagagagtgtcttggctagtgtggggtct
gaaaatgagcttgttaagtgcttggagtgttctgagagaggtcgtaaagtcgtaggtata
atgggtaaacgtagtttcgaatcgaaagtttcagtagatgatagggaagatgtagaaggt
gaatctaaaaacattgttcagttgggcattccatcgaacgatgaagctgcaatattgaac
tctgaagtacaagaagagattaaggccacttcaaacaacaacaacatagatgctaataat
tcaatttctgaaatgataaaggaagaagccgcaatcttgagctctgaagttgatgcagag
attatcaatggtgaaaattcaatttctgaacccgtcaaggtaggagctgcaatattgaaa
tctgaagctaaagaagagagtatggcttcctcggacaacagacatgatggtaattcaatc
tctcaacctataaaggaaggctcgtgttttcaggacaatgggacctctgaatcgacccct
gatagtagggcttctgcacaaaacgagcctggtgtttctcattctgaacagtctgacaag
ggaaagaataagcttgagaagggaagtgggttttgttatggcgacaaggagagggagaga
ttcaatagaattctgggtcattatgttggaactcataacttccacaacttcaccaccaga
attaaagccgaggatccctccgcccaacgcttcattgtttcatttgatggcaacaccatt
gtcactgtagaaggcatcgaatttgtgaagtgtgaagttgtggggcagagcttcatgctt
catcagattcggaagatgattggtcttgcagtagcaatcatgagaaacgttgcccctgag
tccttgctagaaacagctctactaaaggatgttaacatcaatgtgcccacggcccctgaa
gttggcttatacctggacgagtgtttcttctcatcctacaacaagaaatggagagacagc
catgaagaggtatccatgaaagcctatgcagaagaggcagaagagttcaagatgaagcat
atctactcccatatcgcagcaacagaacataaggaaggagttgtggccctctggctgcat
tctctgaaccaccgcaactaccccgatttatgcattggggacaatggagctgcctctgat
gggaaaaacggtgaagaggaaacaatggctgactga
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