Vitis riparia (riverbank grape): 117907201
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Entry
117907201 CDS
T07274
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03030
DNA replication
vri03420
Nucleotide excision repair
vri03430
Mismatch repair
vri03440
Homologous recombination
vri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117907201
03420 Nucleotide excision repair
117907201
03430 Mismatch repair
117907201
03440 Homologous recombination
117907201
03460 Fanconi anemia pathway
117907201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vri03000
]
117907201
03032 DNA replication proteins [BR:
vri03032
]
117907201
03400 DNA repair and recombination proteins [BR:
vri03400
]
117907201
Transcription factors [BR:
vri03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117907201
DNA replication proteins [BR:
vri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117907201
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117907201
MMR (mismatch excision repair)
117907201
DSBR (double strand breaks repair)
HR (homologous recombination)
117907201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
RADX
zf-CCHC_3
DUF936
DUF223
NGO_1070-like
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
117907201
NCBI-ProteinID:
XP_034676538
LinkDB
All DBs
Position
2:2077510..2084133
Genome browser
AA seq
882 aa
AA seq
DB search
MGVNLTEGAISMLCSGDAQGSDVKPVLQVADIRLVNTQQQSNSNERFRILLSDGCHLQQG
MLATQRNELVKSGRLQKGSVVQLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQ
GGTAGGVAPIARTSAPMPSSVDHPGTVLGNPQSFGNSSLTGGSAAKPNMAGVASPYHANS
FSSNPDSGRFAGTNAPPMYSKMQPDAGIPASAASTGSYGDQSTGFRNNKVEVSRAPYNAP
ARQPQSAYQQPPPMYTNRGPVARNEAPARIIPIAALNPYQGRWTIKARVTAKGELRHYNN
PRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIETGKVYLISKGSLKPAQKTFNHLR
NDHEIFLESTSTIQPCFDDDNSIPRQQFHFRPISDVESMENNSVVDVIGVVSFISPSTSI
MRKNGTETQKRALHLKDMSGRSVELTLWGNFCNAEGQRLQNMCDSGVFPVLAVKSARVND
FNGKAVGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVSISREVTSMGRTDVRKTISQ
IKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERC
DQSVDDCDYRYILQFQIQDHTGLTWVTAFQECGEEIMGISAKNLYYLKYEEQDDEKFGEI
LRGVLFTKYSFKLKVKEEIFSDEQRVKSTVVKAEKVNFSSESRFLLDMVEKHKVEDSTFP
LKSENVISNGGMTNPGLGNVGIRQSTPSVNYSGNASNAGRDFGFPANQGVQHGNQYGSSG
LSATGSTGMYQSCNSCGGTGHSSSNCPSVMHSPRQSSGGGYVSRASTGPSAGGTTGECYK
CHQFGHWARDCPGLNTGPPAYGSSGVNSGSYSSFAKQRVGGF
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttaatctgaccgaaggcgccatctcgatgctttgcagcggcgacgcgcaaggg
tccgatgtgaagccggtgctgcaagtggcggacatcagattggtgaatactcagcagcag
agcaacagcaacgaaaggtttcggatactgttgtcggatgggtgccatctgcagcagggg
atgctggcgacgcagaggaacgagttggtgaaatccgggaggttgcagaaggggtcggtt
gttcagttgactcagtttgtctgcaacgtcatcaaggatcgcatgattattattatcatt
gatttggatgtgatacttgaaaagtgtgatcctattggggaaccaaaacaatatgtgcaa
ggtggaactgctggtggtgttgctcctattgcaagaacttcagcgcccatgccatcctca
gtggaccatccagggacagtgctgggaaatcctcaatcttttggcaatagttcactcact
ggtggctctgctgctaaaccaaatatggctggggtagcttctccataccatgctaattct
ttttccagcaatcctgactcaggacgatttgctggaacaaatgcacctccgatgtacagc
aaaatgcaacctgacgctggaattcctgcatcagcagcttcaactggatcatatggtgac
cagagtacaggttttcggaacaataaagtagaagtttcacgggctccttataatgctccg
gcacgccagcctcagtctgcatatcagcagccacctccaatgtacacaaatagaggacct
gtggctaggaatgaagctcctgccagaataattccaattgctgctcttaatccttatcag
ggaaggtggacaattaaggccagagttactgcaaagggagaacttcggcactataataat
cctcggggtgatggcaaagtattctcttttgatcttctggactctgatggtggagaaatt
agggtaacatgtttcaatgctgtggctgatcaattctacaatcagattgaaactggtaaa
gtgtatttaatttccaaggggagcctgaaacctgctcaaaaaactttcaatcaccttcgc
aatgatcatgagatattcttagagagtacatcaacaatccagccttgctttgatgatgac
aactcaatcccgaggcaacaatttcacttccggcccatcagtgatgttgaaagcatggag
aacaacagtgttgtggatgtaattggtgtggtctcttttatcagcccctctacttccata
atgaggaaaaatggtactgaaactcagaagagagccctccatttgaaggacatgtctggc
cgaagtgttgaattaactctatggggaaatttctgcaatgcggaaggacaaaggctgcaa
aatatgtgtgattctggggtatttcctgttctggctgtgaaatctgccagggttaatgat
ttcaatgggaaagcagtggggactatttctaccagccaactgttcatagagccagatttt
ccagaggctcgcaagcttaaagaatggtttgacaaggaagggaggaacaccccttctgtc
tctatttccagagaagtaacaagtatgggcagaacagatgttcgaaagactatttctcaa
atcaaagatgagaggctagggacttcagaaaagccagattggattactgtctgtgcaact
gtttctttcataaaagttgataatttttgctatacagcatgccccattatgattggtgat
cgtcaatgcaacaagaaggttacgaacaatggagatgggaaatggcgatgtgagaggtgt
gatcagtctgttgatgattgtgactacaggtatattcttcagttccagatacaggaccat
actggcttgacatgggtaactgcattccaggaatgcggtgaggagatcatgggcatatct
gcgaaaaatctgtattatttgaaatatgaagaacaagatgatgaaaaatttggagaaatc
ctacgcggggttctttttactaaatattcattcaaattgaaagtgaaggaggagatattc
agtgatgaacaacgtgtgaagtctactgttgtcaaagcagagaaggtaaatttctcttct
gagtcccggtttcttttggatatggtggagaagcataaagtagaggactccacttttccc
ctcaaatcagaaaatgttatttccaatgggggaatgactaatcctggactcgggaatgtt
ggaattagacagtccacaccatctgttaactattctggaaatgctagcaatgctggtaga
gattttgggttcccggcaaatcaaggggttcagcatgggaaccaatatggtagctctggt
ctttctgcaactggttcaactggtatgtatcagagttgcaacagctgtggtggtactggc
catagctcttcaaactgccctagtgtcatgcactccccgagacagtcatcaggagggggc
tatgtcagcagggcatccactggcccaagtgctggaggcacgactggtgagtgctataaa
tgccatcaattcggacactgggcaagggactgtcctggtttgaacactggtcctccagct
tatggaagcagtggtgtcaactcagggagttacagcagctttgcaaagcaacgggttggc
ggcttttaa
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