KEGG   Vitis riparia (riverbank grape): 117907303
Entry
117907303         CDS       T07274                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4 isoform X1
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03022  Basal transcription factors
vri03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    117907303
  09124 Replication and repair
   03420 Nucleotide excision repair
    117907303
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vri03021]
    117907303
   03400 DNA repair and recombination proteins [BR:vri03400]
    117907303
Transcription machinery [BR:vri03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     117907303
DNA repair and recombination proteins [BR:vri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     117907303
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 117907303
NCBI-ProteinID: XP_034676694
LinkDB
Position
18:3141806..3160999
AA seq 303 aa
MGRSAVMAPVPSKLYSDDVSLLVVLLDTNPFFWSTASLPFSKFLSHVLAFLNSILLINQL
NQVVVIATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLA
AGIGSSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRS
MVPIDSCVMGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKP
AGVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRKT
PET
NT seq 912 nt   +upstreamnt  +downstreamnt
atgggacgaagcgcagtcatggcaccagtaccttcgaagctctattcagatgacgtcagc
cttctcgtggttttgctcgacaccaaccctttcttttggagcactgcttctcttccattc
tccaagtttctctctcatgttctagcgtttctgaattcaattcttctcatcaatcaactc
aatcaagtcgtggttatcgctaccggatgcaattcctgcaactttattttcgattcttct
tctgtgccggcgaatccaaatctggaaaatgggagaatgcctgctctctgttccaatttg
ttgcagaaattggaggagtttgtgaccggagatgaaaaattgagcaaagaagttttagcg
gctgggattgggtcttccctgctatcagggtctttgtctatggctctttgctatatacag
cgggtttttcgaacaggaccactgcatcctcagcctcgaatcttatgcctgcagggatct
ccagatggacctgaacaatatgttgcagtgatgaatgcaatattctcagctcagcgttct
atggttcccatagattcttgtgttatgggagcccagcattctgccttcctgcagcaggct
tcttatattactgggggtgtgtatctgaagccccaacaactagacgggctgtttcaatat
ctctcgacagtatttgcaactgatttgcattctcgccgctttctacaacttcctaagcct
gcaggagtagatttccgtgcctcgtgtttttgccataaaaacacaattgatatgggctac
atatgttctgtctgtctgtctatattttgtaagcatcacaagaaatgttcgacctgtggg
tcagtttttggtcaagcccagtctgatggtaactcagcaacagaccggaaaagaaagact
ccagagacataa

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