Vitis riparia (riverbank grape): 117907560
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Entry
117907560 CDS
T07274
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117907560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117907560
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
117907560
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_17
TPR_16
TPR_14
TPR_8
TPR_CcmH_CycH
TPR_6
TPR_19
CFAP70_TPR_C
TPR_12
TPR_9
CFAP70_mid_TPR
TPR_7
BTAD
ARM_TT21_C
Y2_Tnp
Motif
Other DBs
NCBI-GeneID:
117907560
NCBI-ProteinID:
XP_034677031
LinkDB
All DBs
Position
18:complement(276331..322077)
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AA seq
1182 aa
AA seq
DB search
MEAQEEEGKNDHVLRKLQESVDSNPDDASLHFNLGVFLWEKEEQEWKEKAAEHFVRSAKL
NPQNGDVFRYLGHYYARVSVDTQRAFKCYQRSVTLNPNDSDSGEALCDLLDLGGKETLEI
AVCREASEKSPRAFWAFRRLGYLQLHQNKWSEAVQSLQHAIRGYPSCADLWEALGLAYQR
LGMFTAAIKSYGRVIELEDSRIFALVESGNIFLMLGSFRKGIEQFRQALEISPESVSAHY
GLASGLLSLSKECTNLGAFRWGTSLLEEASKVAKSTTCLAGNVSCIWKLHGDIQLAYAKC
LPWLEENWNLEIDEEAFSNSILNWKRSCCLSAISANYSYQRALHLAPWQANIYTDIAISS
DLICSLKEDDKHNPNSWQLPEKMSLGGLLLEGDNNEFWVTLGFVSGHNALKQHAFIRGLQ
LDVSLAVAWACLGKLYRKEGEKQLARQAFDSARSIDPSLALPWAGMSADTHARDPTTDEA
YESCLRAVQILPVAEFQIGLAKLALLSGHLSSSQVFGAIQQAVQHAPYYPESHNLNGLVC
EARCDYQSAVASYRLARCAINTFSGSILKSHLRDISFNIARSLSKAGNALDAVQECEDLK
KEGLLDAQGLQIYAISLWQIGENDLALSVARDLAASVSAMEQASRATSVSFICKFLYKIS
GQESAIISILKMPKELFQNSKISFVVSAIDALDESNKLESVVSSSRCFLASHEEIARMHC
LVALGKLVKQGSEHCLGFENGVHHLRKALHMFPNSVLIRNLLGYLLLSSQEGEDAHSASR
CCIVDPSHSPNKEGSKSAFEILGAGAVACFASGMSNQKFSFPTCRYRCMSGPGAIQQLQK
WLHREPWNHNARYLLILNFLQKAREERFPRHLCTIIERLNFVAISNHLYLKKDTCCQYQK
FQLLLCASEISLQGGDHLGCVNHAENASTLLLPDCYLFFAHLQLCRAYVAKDDFKNLRKE
YIKCLELKTDYCIGWLCLKFMDSHHELQNDLSISELNFKECSKERKSSCNKWMALFDLLQ
GLISVQNQDFLCAEEFLAQACSLSDTESCIFLCHGVICMELARQQCDSQYLSHAIKSLMK
AQEISLIPLPFVPTLLAQAEASRGSKAKWEKNLCLEWFSWPPEVRPAELFLQMHLLARHS
KSGSESSSCVEPYQSQQRWVLRAIHLNPSCLRYWKVLQKLMQ
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggaagcacaggaagaggaagggaaaaatgaccatgtcttaaggaagctacaagagtct
gtggattccaatcctgatgacgcctcccttcattttaatctcggggtcttcttgtgggaa
aaggaggaacaagagtggaaggaaaaagctgcggagcattttgtaagatcagccaaatta
aatccgcagaatggggacgtattcagatatttggggcattattacgcaagggtatccgtt
gatactcagagagctttcaagtgttaccagagatcggtcacccttaatcccaatgattcc
gattctggggaagcgttgtgtgatttgttggacctaggaggaaaggagactttagagatt
gcggtctgcagggaagcatcagagaagtcccctagggctttttgggcttttcgaagattg
ggttacctgcagctccatcaaaataaatggtctgaagcagtacagagtcttcaacatgcc
attcgagggtatcctagctgtgctgatttgtgggaagctctggggcttgcctaccagcga
ttgggtatgtttactgcagctataaagtcatatgggagagtcattgaattggaggattcc
agaatcttcgcattggttgagagtggaaatatctttttgatgcttggttcctttagaaag
ggtatcgagcaatttcggcaagctttggagatctcacctgaaagtgtatctgcacactat
ggtcttgcttctgggctgcttagtttgtcaaaggaatgtaccaatttgggtgcttttaga
tggggaacttcacttttagaggaagcatctaaagttgcaaaatcaactacctgtttggct
ggaaatgtttcatgtatttggaaattgcatggggatattcagcttgcatatgcaaaatgt
ttaccgtggttggaggaaaactggaacctagagattgatgaggaagctttcagtaactcc
attcttaattggaagcgatcctgctgtttgtctgcgatatctgccaattattcttaccag
agggctttgcacttagccccatggcaagctaatatctatactgatattgcaataagttca
gatctcatttgctctttgaaggaggatgataaacataacccaaattcttggcagctacct
gaaaaaatgtctttgggaggcttgttacttgagggtgacaataatgagttctgggtgaca
ttgggatttgtatctggtcataatgcactgaagcaacatgcttttatcaggggactgcag
ttagatgtatctttagctgttgcatgggcatgccttgggaagctttatagaaaagagggc
gagaagcaattggcaaggcaggcatttgattctgctagaagtatagatccttcacttgca
ttaccatgggcaggcatgtcagctgatacacatgccagggatcccacaacagatgaggct
tatgagagttgtttacgtgctgtgcagatattgcctgttgcagagtttcaaattggcctt
gcaaagcttgctcttctttcaggtcacctttcatcctcacaggtctttggagccatccaa
caggctgtgcagcatgcaccttactatccagaatcccataatttgaatggactggtttgt
gaggcacggtgtgattatcagtctgctgttgcttcttataggctagcacgctgcgcaatc
aacaccttttcaggctccatattgaaatcccatttgagagacatatcatttaatattgca
agatcactcagtaaagcagggaatgcccttgatgctgttcaagaatgtgaagatttgaag
aaagaaggtctgcttgatgcacaaggtttgcaaatatatgctatctcgttatggcaaatt
ggtgaaaatgaccttgccctgtctgtggcaagggatctagctgcaagtgtttctgccatg
gaacaggcttctagggccacttctgttagtttcatatgtaaatttctgtataaaatatct
gggcaggaatcagcaataataagcattttgaaaatgccgaaagaactatttcagaattca
aagattagttttgttgtgtccgccattgacgctcttgatgaaagtaataagctggaatca
gttgtttcaagcagtcgatgctttcttgcatctcatgaagagatcgctagaatgcactgt
ttagtagcacttggtaaactggtcaaacaaggatcagagcactgccttggatttgaaaat
ggggttcatcaccttagaaaagctcttcacatgttccctaacagtgttttgataaggaat
cttcttggttatcttttactatcctctcaagaaggggaagatgctcatagtgctagtagg
tgctgtattgtagacccctcccactctcccaataaagaaggttcaaagtcagcatttgag
atccttggtgctggagcagttgcttgctttgccagtggcatgagcaaccagaaattctct
ttcccaacatgcagataccggtgcatgagtggaccaggagcaatacaacagctgcagaag
tggttgcatagagaaccttggaaccataatgcacgttacttgttgatacttaattttcta
cagaaggcacgtgaagagagatttccaagacatctttgtacaataattgagcggctaaat
tttgtggctatttccaaccacttatatttaaagaaggatacatgttgtcaataccaaaag
ttccagctgctactttgtgcttctgaaatcagtttgcaaggtggtgatcatcttggctgt
gtcaaccatgctgaaaatgcttcaacactcttgcttcctgattgctacctcttttttgcg
catttgcaactatgccgtgcttatgttgcaaaagatgattttaaaaatctacggaaagag
tatataaaatgcttggagcttaaaacagattattgtatcggttggctatgtcttaaattc
atggattctcaccatgaactacaaaatgatttgagcatctcagagttgaacttcaaggag
tgctcaaaggagagaaagagttcatgtaacaagtggatggctttatttgatttgctgcag
ggtctgatttctgttcagaatcaagattttctctgcgcagaagaatttcttgcgcaagct
tgttcattgtcagatactgagagctgcatcttcctatgtcatggtgtcatttgtatggag
cttgccaggcagcagtgtgattcccagtatttgtcacatgctataaagagtctcatgaaa
gcccaagagatttctctgattcccttaccttttgtcccaacattgctagctcaagcagag
gcaagcagaggctctaaagcaaagtgggagaaaaatctctgtcttgaatggttttcttgg
ccaccagaggtgaggcctgctgaactctttcttcaaatgcatttgcttgcaagacactcc
aaatccgggtctgagtcatcctcctgtgtggagccctatcagagccaacagaggtgggtt
ctccgggcaatccatttgaacccttcttgtttgagatattggaaggttttgcagaagtta
atgcagtga
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integrated database retrieval system
