Vitis riparia (riverbank grape): 117907943
Help
Entry
117907943 CDS
T07274
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vri03009
]
117907943
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
117907943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
Beta-prop_VPS8
ANAPC4_WD40
Beta-prop_IP5PC_F
Beta-prop_IFT140_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_WDR19_1st
WDR54
Beta-prop_WDR75_1st
Beta-prop_SPT8
Ge1_WD40
Beta-prop_DCAF12
BCAS3_WD40
Motif
Other DBs
NCBI-GeneID:
117907943
NCBI-ProteinID:
XP_034677517
LinkDB
All DBs
Position
18:8693173..8698219
Genome browser
AA seq
448 aa
AA seq
DB search
MDGTEVVVASSPVDAGISCWDLQSGAEHLRHRSCASPPHGLVCVADRFFASSQLRDSSSS
SSSGSIFYWSWSKPQVEVKSFPAEPIKPLAANREGTYIAGGGLSGDIYFWEVASGRLLKK
WHAHYRAVTCLVFSDDESLLISGAEDGCVRVWSLFMIFDDLRREEAGHLYEHSFSEHTLR
VTDIVTGYGGGNAIIVSASEDRTCKVWSLSTGRLLRNVVFPSIIDAIALDPGEHVFYAGS
RDGKIYIAALNAVGSSSNSYGMHIIGSLSDHSKAVTCLAFATDGILLVSGSEDGMVRVWD
TKTRNIFRIFKHAKGPVSNILVVRRPNDSNPRNSQTSSRKHGSFLSPPLDKYLNSSDENE
DAKVFIGCQTTFSKSVDASYRSCHIIIDQIKELQQQGSSAATEMEMERLKIDSQKSVQMV
QQWKKMYENLHQFCVNELLDADHAGVSN
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggacggaacggaggtggtcgtggcttcgtccccggtagatgccggcatcagttgctgg
gacctacagtcaggggcggagcatctccgtcatcggtcctgcgcttctcctcctcacggg
ctcgtctgcgtcgccgaccgcttctttgcctcttctcagctccgcgactcctcctcctcc
tcctcctccggctccattttctattggtcctggtctaagccacaggtggaagttaagagc
tttcccgctgaaccaatcaagccgctagcggctaaccgtgagggaacttacattgctgga
gggggtttatcaggggatatatatttttgggaggttgccagtggtaggcttcttaagaag
tggcatgctcattatagggctgttacttgcttagtgttttctgatgatgaatcgctactt
atttctggggcagaggatggatgcgtgcgggtttggtcccttttcatgatatttgatgat
ttgaggagggaggaagcaggacacctatatgagcatagtttctctgagcacactttgcgg
gttactgatattgtcacgggctatggaggaggcaatgcaattatagtgtctgcttctgag
gatagaacctgtaaggtttggagcttgtctacggggagattgttaagaaatgttgtattc
ccctcgataattgatgctattgcattggaccctggggaacatgttttctatgctggcagt
agagatggcaagatatatattgctgcactaaatgccgtaggctcctctagcaactcttat
gggatgcatattattggctcattgtctgatcacagtaaggctgttacttgcttagcattt
gctacggatgggatcttattggtttctggatcagaggatggaatggtacgagtctgggac
actaaaacccgtaacatctttcgcattttcaagcatgcaaaaggtcctgtgagcaatatt
cttgttgttaggcgacctaatgactcaaaccctcggaattcacaaacttcctcaaggaag
catgggtcattcttatcacctccacttgataaatatttgaattcgtctgatgaaaatgaa
gatgctaaggtcttcatcggttgccagaccactttcagtaaatctgtggatgcttcatac
cgcagttgtcatatcattattgatcaaatcaaagaactccagcaacaagggtcttcagct
gctactgaaatggagatggagagattgaagattgattcccaaaaatctgtgcaaatggta
caacaatggaagaaaatgtatgaaaacttgcatcaattctgtgtaaatgagcttttggat
gcagaccatgcaggagtctccaattga
DBGET
integrated database retrieval system
