Vitis riparia (riverbank grape): 117908859
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Entry
117908859 CDS
T07274
Name
(RefSeq) probable pectate lyase 22
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri00040
Pentose and glucuronate interconversions
vri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117908859
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117908859
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
T4_y05I_N
Motif
Other DBs
NCBI-GeneID:
117908859
NCBI-ProteinID:
XP_034678544
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Position
19:complement(9207698..9209845)
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AA seq
403 aa
AA seq
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MSALSLSFLVILLYVSTAYSARLLPLESEATTWSSRGGGSLRTELDEVSCRTGNPIDDCW
RCDPDWETNRKMLADCGVGFGRNAIGGRDGELYVVTDSGNDNPANPIPGTLRHAVIQYVP
LWIVFDHDMVINLKEELIMNSYKTIDGRGFNIQIANGACITIQNVSNIIIHGVYIHGCVP
TGNAIVRDRPDHYGMRGMTDGDGISIFGGTDIWIDHCTLADCYDGLIDAVYGSKSITISN
NYMLNHNEAMLMGHSDDFLADKNMQVTIAFNYFGEGLVQRMPRCRHGYFHIVNNVYTDWE
MYAIGGSANPTINSQGNVFIAGDDNSTKEVTKRESLLGYEEWKDWNWRSDGDLMLNGAYF
TASGEEAPASYSKASSMVARPASLLTYITASAGVLNCQIGYAC
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccttgtcactctccttccttgtgattctcttatatgtctctactgcatactct
gcacgtctcctaccgctagaatcagaagcaacaacatggagctcaagaggaggaggaagt
ttgagaacggagcttgatgaagtatcatgtagaactgggaaccccattgatgattgctgg
aggtgtgaccctgactgggaaaccaacagaaagatgctagcagactgtggtgtagggttc
gggcgcaatgccattggcggtcgagatggtgagctttacgttgtcactgattcaggcaac
gacaaccctgccaacccaatcccaggcacactcagacatgctgtcatccaatacgtgccg
ctgtggatcgtgtttgatcatgacatggtcatcaacctgaaggaagagctcatcatgaac
tcttacaagacaatagatgggaggggattcaacatccaaatagccaatggggcctgcata
accatacaaaacgtgagcaacatcatcatacatggtgtctacatacatggttgtgtgcca
actgggaacgccatcgtgagggacaggccggatcattatgggatgagagggatgacagat
ggggatgggatatcgatatttggaggaacggatatatggattgatcattgtaccctagct
gattgctacgacggactcattgatgcggtgtatggatctaaatcaataaccatctcaaac
aactacatgttgaatcacaatgaagccatgctcatggggcatagtgatgacttccttgct
gacaagaatatgcaggtcacaattgccttcaattactttggggaaggcctagttcaaaga
atgcccaggtgcagacatgggtatttccatattgtaaataatgtatacactgattgggaa
atgtatgcaattggtggaagtgccaatccaacaatcaacagccaaggaaatgtcttcatt
gcaggggatgacaattctaccaaggaggtgaccaaacgtgaaagcctcttgggatatgaa
gagtggaaggactggaattggagatcagatggagatttgatgttgaatggtgcttacttt
acagcttctggagaagaagcacctgcaagttactcaaaagcatcgagcatggtagcaaga
ccagcttcacttttaacatatatcactgcatctgctggagttctcaattgtcagataggc
tatgcatgctaa
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