Vitis riparia (riverbank grape): 117909334
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Entry
117909334 CDS
T07274
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vri03009
]
117909334
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
117909334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_Vps41
NBCH_WD40
Beta-prop_TEP1_2nd
Beta-prop_EML
WDR55
ANAPC4_WD40
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_IP5PC_F
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
PROPPIN
PEP5_VPS11_N
HemN_C
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
117909334
NCBI-ProteinID:
XP_034679224
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All DBs
Position
19:complement(371096..372768)
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AA seq
375 aa
AA seq
DB search
MASFLPEIVLTSSPDGPIIAYDPYSGAIIAHFTGSRSPPKGLTLAGKGLIAASHISATGA
GSINLYNWWSSAVFNHLPLPEPVAPLAATLDGAYLFAGGLSGHIYSISLPSGKTIQTFPA
HSKSVSCLEINDDGSLLISGSDDGSIVVAPIFQLVATSPDGTCKFWSLPQGLLLRTVALP
CPMAGLAIDPTESHFYAAGSDGSIYIGATKSPTRQLTKRNLQVIKWREKHGGPVVSLAML
NQGRNLVSGSEDGNVWIWEVEKGQVMTVLGNEMVSISDLVMARGVANSRGSSSNLGINME
EWREKSGLAARELSRPVRKMEEMKEKLGVAVKDRSRAIDILESAIGAYERLLELILKEAK
GGTGNKSGGKEKESM
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atggcatcctttttgccggaaattgtcctgactagctcccctgatggccccattattgcg
tatgatccttactcaggtgccatcatagctcacttcactggaagccgatcacccccgaaa
ggcctcacccttgctggaaagggcctcattgcagcctcccatatctcagccaccggtgca
ggctcaatcaacctctataactggtggtcttccgcggtcttcaaccacctccctctccct
gaaccagtggctccgcttgctgccactcttgacggtgcatacctctttgctgggggactt
tctggccacatttattccatctcactgccctcagggaagacaattcaaacgtttcctgca
cattccaagtctgtctcctgccttgaaatcaacgatgatgggtctctcctcatatctggt
agtgacgatggctccattgtagtagccccaatcttccagcttgtggcgacctcaccagat
ggcacatgcaagttctggagcctcccccaagggctcctgctgcgcacggtggctctcccg
tgtcccatggcaggcctggcaatcgacccaactgagtcccatttctacgctgcagggtca
gatggctcaatctacattggagcaacaaagtccccaacccgacaactgaccaaacgaaac
ctgcaagtgatcaaatggcgtgagaagcatggtgggccagtagtatcattggcaatgctg
aatcaggggcggaacctggtgtcaggatcggaagacgggaatgtctggatctgggaggtg
gagaaagggcaggtgatgacggtgctgggcaatgagatggtgagcatcagcgacctggtg
atggccaggggggtggctaatagtagagggagcagttccaatctgggaataaacatggaa
gaatggagggagaagtcaggattagcagcaagggagctgagcaggccagtgaggaagatg
gaagaaatgaaagagaagctgggggtggcagtgaaggacaggagtagagccattgatata
cttgaatcagccattggagcatatgaaaggctgttggaactcattctcaaggaagccaag
ggaggcactggcaacaagagtggaggaaaagagaaagaaagtatgtga
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