KEGG   Vitis riparia (riverbank grape): 117909553
Entry
117909553         CDS       T07274                                 
Name
(RefSeq) protein SPA1-RELATED 3 isoform X1
  KO
K26557  protein SPA1-related 3/4
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:vri00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    117909553
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:vri04121]
    117909553
Ubiquitin system [BR:vri04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Multi subunit type E3 associated proteins
    117909553
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C Pkinase Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_WDR75_1st WD40_RFWD3 WDR90_beta-prop_4th PK_Tyr_Ser-Thr Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_Vps41 NBCH_WD40 WD40_like
Other DBs
NCBI-GeneID: 117909553
NCBI-ProteinID: XP_034679483
LinkDB
Position
19:complement(3094880..3107091)
AA seq 918 aa
MCVLWIAFSYRWMTMEGSSESGWRNSDISRGLNVSIVSHRRNPRQRHANRIGLSGGASHD
SGFISGRKERDHVLSSHTKNHKNQVGISQVCDDDVALDPFVRAIEWGDVSLRHWLDKPER
RVDALECLHIFTQIAEIVNAAHSQGVVVNNVRPSCFVMSSFNHVSFIESVSCSDSGSDSL
EDGSNSHTEEDNGLSSLPDDLHLQKSRSGNEDFLPTIMPTNASQIVSSETSCMQSSSVSA
THVTLVVEDREEYKSTDRRSVEQSEEKKQTFPMKEILLMETNWYTSPEEISGAQTSCASD
IYQLGVLLFELFCTFSSREEKSRTMSCLRHRVLPPQLLLKWPKEASFCLWLLHPEPSSRP
KISELLQSEFLTEPRDKMEEREAAIELRERIEEQELLLEFLLLMQQRKQGAVDKLQDTIS
FLSSDIEEVGKQQAILRKRGGSYQELVKDDQSTSDLSPMDVDENEDSTSVRSRKRFRQGV
HHIKELDDTLNNGQKLGMNAENPEILISKSSRLMKNFKKLESAYLLTRHKPTKPSGKPSN
KISPPSSNGRGSIVVTERSSVNNLASKDQYNEHGQSGWINPFLDGLCKYLSFSKLKVKAD
LKQGDLLNSSNLVCSVSFDRDGELFATAGVNKKIKVFECNSILNEDRDIHYPVVEMACRS
KLSSICWNSYIKSQIASSNFEGVVQVWDVTRSQVLTEMREHERRVWSIDYSLADPTMLAS
GSDDGSVKLWSINQGVSVGTIKTKANVCCVQFTPDSGRYLAFGSADHRIYYYDLRNSKIP
LCTLLGHNKTVSYVKFVDSTHLVSASTDNTLKLWDLSMCTARVLEGPLQSFTGHQNVKNF
VGLSVSDGYIATGSEANEVVIYHKAFPMPALTFKFNSMDSDYESDDSAQFISSVCWRGQS
STLVAANSAGNIKILEMV
NT seq 2757 nt   +upstreamnt  +downstreamnt
atgtgtgtgctctggattgcattcagctataggtggatgacaatggagggttcttctgag
tcgggttggcgtaattctgatatttctaggggattgaatgtttctatagtttcgcacagg
agaaatcccaggcagcgtcatgcgaatagaattggcttgtctggaggtgcatcacatgat
tctggatttatatctgggaggaaggagagagatcatgttctgtcgtctcatactaagaac
cataaaaaccaggtcggtatttctcaagtttgtgatgatgatgtagctttggaccctttt
gttcgggcaatagaatggggtgatgttagcttgaggcattggttggacaaaccagaacga
agagttgatgcgcttgaatgtttgcacatatttactcaaattgcagaaattgttaatgca
gcacattcacaaggagtagttgttaataatgtgaggccttcctgttttgtcatgtcatct
ttcaaccatgtttcctttattgagtcagtatcctgctcagattcaggttctgattctttg
gaggatgggtcgaacagccataccgaggaggataatggattatcttctttgcctgatgac
ttgcatctgcagaaaagccggtcaggaaatgaagattttttacccacgataatgccaaca
aatgcttctcagattgtatcatcagaaaccagttgcatgcaatcaagttcagtttctgca
acacatgtgacattagtagtagaagatagagaagaatataaaagtacagatagaagaagt
gttgaacaatcagaagaaaagaagcaaacctttccgatgaaggagatattgctcatggaa
accaattggtacacgagtccagaagagatttctggtgctcagacttcctgtgcttctgat
atttaccaattgggcgtcctcctttttgagttattctgcacatttagctcaagagaagaa
aagagcagaactatgtcttgtttgaggcatcgagttcttcctcctcagttgttgttgaag
tggccaaaggaagcttcattttgcctatggttgctgcaccctgagccaagtagtcggcca
aagataagtgaattgttacaaagcgagtttcttaccgaaccaagggacaaaatggaagaa
cgtgaagcagcaatagagcttagagagagaatagaggagcaggaattgttgctggaattt
cttttgttgatgcaacaaagaaaacagggagctgtggataagttgcaagataccatttct
tttctatcttctgatattgaagaagtcggaaaacagcaagctattcttaggaaaagggga
ggctcataccaagaactggtcaaggatgatcaatcaacatctgatctttctccaatggat
gttgatgaaaatgaggattccactagtgtcaggtctaggaaaagattcagacaaggagtt
catcacataaaggaattggatgatactttaaacaatggccaaaagttgggcatgaatgct
gaaaatccagaaattctcatttccaaaagttctcgattaatgaagaactttaagaaacta
gagtcagcttatcttttgacaagacacaagccaacaaagccatcagggaaaccatccaat
aaaatctcccccccgagtagtaatggtagaggatctattgttgtaactgaaagaagttca
gttaataatttggcatcaaaagaccagtacaatgagcacggacaaagtggatggataaat
ccatttcttgatggtttgtgcaagtatctatctttcagtaagttaaaagttaaagcagac
ttgaagcaaggggatctattaaattcttccaacctagtatgctctgtcagttttgatcgg
gatggagaactttttgctacagctggtgtaaataagaagattaaagtatttgaatgtaat
tcaatcctaaatgaagatcgtgatatccactatcctgtagttgaaatggcttgtaggtca
aagctaagcagtatatgttggaatagttatatcaaaagccagattgcttccagtaacttt
gaaggtgtagtacaggtatgggatgttacaagaagtcaagtacttacagaaatgagagag
catgagaggcgtgtatggtccatcgactactcattagcagatccaacaatgttggctagc
ggcagtgatgatggttcagttaagctatggagtatcaatcagggagtaagtgttggtacc
atcaaaacgaaggccaatgtatgctgtgttcagtttaccccagactctggccgttacctt
gcttttggttcagctgatcatagaatttattactatgatctccgtaactcaaaaatacct
ctgtgcacattacttgggcacaataagactgtgagttacgtcaagtttgtagattcaacg
catcttgtttctgcatccacggataacactctgaagctctgggatttgtcaatgtgcacg
gctcgggttcttgaaggtccacttcaatcattcactggccatcagaatgtaaagaacttt
gtaggtttgtctgtatccgatggttacattgctacgggctcagaagcaaatgaggttgtc
atctaccacaaggccttccccatgccagcactgacattcaaattcaacagcatggactct
gactatgaatcagatgattctgcacaattcatctcttctgtatgttggcgcggccaatca
tccaccttagttgctgcaaactctgctggaaacatcaagattttggagatggtttag

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