Vitis riparia (riverbank grape): 117909790
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Entry
117909790 CDS
T07274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117909790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117909790
03012 Translation factors [BR:
vri03012
]
117909790
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117909790
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117909790
Translation factors [BR:
vri03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117909790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117909790
NCBI-ProteinID:
XP_034679731
LinkDB
All DBs
Position
Unknown
AA seq
522 aa
AA seq
DB search
MDLGALCCYDRMVGKVEATIEHICRYEGEGAILVFLTGWDDISNLLDKVKGNDCLGDPSK
NLVLPLHGSMPTINQREIFDRPPSNMRKIVLATNIAESSITIDDVVYVIDCGKAKETSYD
ALNKLACLLPSWISKASAHQRQGRAGRVRPGFCYRLYPKMIHEAMLQFQLSEILRTPLQE
LCLNIKSLQLGKIGSFLSKALQPPDPLSVQNAVELLKTIGALDDMEELTPLGRHLCKLPL
DPNIGKMLLMGSIFQCLNPALTIAAALAHRDPFVLPINRKEEANAAKRSFAGDSCSDHIA
LLNAFEGWKDAKCSGKERDFCWENFLSPITLQMMDGMRNQFLDLLSDIGFVDKSKGAIAY
NQYSNDLEMVCAILCAGLYPNVLQCKRRGKRTAFYTKEVGKVDIHPASVNAGVHLFPLPY
MVYSEKVKTASIFVRDSTNISDYSLLLFGGNLIPSETGEGIEMLGGYLHFSASKSVLELI
RKLRSELDKLLKRKIEEPGLDISAEGKGVVAAVVELLHSQNV
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggacctgggtgcactttgttgttatgacagaatggttggaaaggttgaagcaacaatt
gaacatatttgtcgctatgaaggggaaggagcaattcttgtattcctcactggctgggat
gacatttctaatctactggacaaagttaaaggaaatgattgtcttggtgatcccagtaag
aatttagtccttccactgcacggttcaatgcctactatcaatcaacgggaaatatttgat
cgaccaccctccaacatgaggaaaattgtgctagccacaaacattgcagagagtagtatc
accatagatgatgttgtatacgtcatagactgtggaaaggcaaaggaaacaagttacgat
gctctgaacaagttggcttgcctgttaccatcatggatttccaaggcttcagctcatcag
agacaaggacgagcgggccgtgtgcggcctggattttgttatagactttatccaaagatg
atacatgaggcaatgctccagtttcagttatctgaaattctccggacacctttgcaagag
ctatgcctgaatatcaaaagtttgcagcttggaaaaattggttcttttctgtcaaaggcg
cttcagcccccagatcctctatctgttcaaaatgcagttgaacttcttaaaacaattggc
gctctagatgatatggaggagcttacaccacttggccgccatctctgcaaattacctttg
gatccaaatattggaaagatgctcctcatggggtccatctttcagtgccttaaccctgca
ttaacaattgcagctgctcttgcacatcgtgacccatttgtccttccaataaataggaaa
gaagaagctaatgctgcaaaaagatcctttgctggcgattcttgcagtgatcacatagca
cttctcaatgcatttgaaggatggaaagatgcaaaatgcagtgggaaggaaagggacttc
tgttgggaaaatttcttatcaccaataaccttgcagatgatggatggtatgagaaatcaa
tttctagatctactgtcagacattggctttgtggacaaatccaagggtgctattgcctat
aatcaatatagcaatgatctggagatggtatgtgcaatcctttgtgctgggctctaccca
aatgttttgcagtgcaaaagaagaggaaagcgaacagcattttacactaaagaagttggg
aaagttgacatccatccagcatctgttaatgctggtgttcatcttttccccttgccttac
atggtttatagcgagaaggtcaaaactgccagcatctttgtacgggattcaacaaacata
tctgattattctctacttctttttggcggcaatctcattccaagcgaaaccggtgaggga
attgaaatgcttgggggttaccttcatttctctgcttcaaagagtgtattagagttgata
cggaaattgcgcagtgagcttgacaagcttctaaagaggaagattgaggagccagggctg
gacatttcggcagagggaaaaggagtggttgctgctgtggttgagttactgcatagtcaa
aatgtatga
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