Vitis riparia (riverbank grape): 117910757
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Entry
117910757 CDS
T07274
Name
(RefSeq) LOW QUALITY PROTEIN: HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117910757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117910757
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117910757
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
117910757
NCBI-ProteinID:
XP_034680800
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
LWVVEPTFLNPFHLNKSGIYFAAIGEAVETNQETVRRGIWRCSICTFDNDESMSACDICG
VLRYPLVNIRNNNDTKTADGICKDSGASIMAKSLFAQLQHRTLKKAVISTQNDDVVIEES
SNFQKHGNIQGQFHEVHKAFSFHGLHHINIAPFKFDVPSPDELVSNGMHASKMASKANLT
TSVSSEVPSRVIDKHGLVNKQSSAKRSDRSSDLMPKGRHENVGDRDFSESGAANTESSAK
GSDSSSMLMPKGRNNNKDESNISSIDQKQTSNSSAGKSVSDVHYKPEKWMIPDQENDVLT
QLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESTEE
REXGITMTVAVAYFDSKKYHVVVLDSPGHKDFVPNMISGATQADSAILVIDASIGAFEAG
VDSTGGQTREHAQLIRSFGVDQIIVAVNKMDAVEYSKERFDFIKMQLGTFLRSCGFKDSS
VSWIPLSAMENQNLVEAASDARLSSWYRGPYLLDAIDSLQPPTRDFSKPLLMPICDVIKT
SSSGQVSACGKLEAGALRSGFKVLVMPSGDVATVRSLERDSQTCAIARAGDNVAVCLQGI
DGSNVMAGGVLCHPDFPVAVATRLELKVLVLDIKTPILMGSQLEFHTHHSKEAATIVKIL
SLLDPKTGKVTKTAPRCVTAKQSAVLEVALSGAVCVEEFSNCRALGRAFLRAMGRTLAVG
IVTRVIKEHE
NT seq
2195 nt
NT seq
+upstream
nt +downstream
nt
ctctttgggttgtggaaccaacatttctaaatccttttcacctcaataaatctggcattt
actttgctgctataggagaagctgttgagacaaaccaggaaactgttcggcgtgggattt
ggcgttgctcaatttgcacatttgataatgatgagagtatgtctgcatgtgatatttgtg
gggttcttcgctatcctttggttaacattcgcaacaataatgatacaaaaacagctgatg
gcatatgcaaagattctggagcatctataatggccaagtctctttttgcacaattgcagc
atcggacactgaaaaaggctgtgatctcaacacagaatgatgatgttgtgatagaagaga
gctctaacttccaaaagcatgggaatatccaaggacaatttcacgaggtccataaggctt
ttagctttcatggacttcaccatatcaatatagcccctttcaagtttgatgttccttctc
cagatgaattagtttctaacggaatgcatgcctccaaaatggcttcaaaagccaatctca
ccacttcagtatcttctgaagttccgtcaagagtcattgataaacatggtttagttaata
aacaatctagtgctaaaagatcagataggtcctctgatttgatgccaaaaggcagacatg
aaaatgtgggtgacagagacttttcagagagtggtgcagcaaatacagagtcaagtgcta
aaggttcagatagctcatccatgttgatgccaaaaggaagaaataataacaaggatgaaa
gcaatatttcttcaattgaccaaaaacaaacgtcaaacagtagtgctggaaaatcagttt
cagatgtgcactataagcccgagaaatggatgatccctgatcaagaaaacgatgttctga
ctcaattgaatcttgcaattgttggtcatgttgattctgggaaatcaactctctcaggaa
gactgctacacctattgggacgaatatcccaaaaagaaatgcacaaatatgagaaagagg
ctaaactacagggcaagggttcgtttgcttatgcttgggcattggatgagagcacagaag
aaagggaanagggcataactatgactgtagctgttgcttactttgactccaaaaagtatc
atgttgttgtgcttgactccccaggtcataaagattttgttccaaacatgatttctggcg
caacacaagcagattctgcaattctcgttatagatgcctcaattggtgcattcgaagcag
gtgtggatagtactggagggcaaacaagggaacatgcacaacttattagaagttttggtg
ttgatcaaattatagttgcggttaacaaaatggatgctgtggaatactccaaggaacggt
ttgatttcatcaaaatgcagcttggaacttttctccgttcttgtggtttcaaggattctt
ctgtgtcctggattccattgagtgccatggaaaatcaaaatctggtggaagcagcttctg
atgctcgtttgtcatcctggtatcgaggaccttacctgttggatgctatagattccctcc
aacctcccacaagagatttttcaaagcctctacttatgccaatatgtgatgtcattaaaa
catcatcatcaggacaggtgtctgcatgtggtaaattggaggctggagctcttcgaagtg
ggttcaaggttctagtcatgccatctggagatgtggcaacagtgcgttccctagaacgtg
actctcagacttgtgccattgcaagagcaggagacaatgtggctgtttgtctacaaggta
ttgatggaagtaatgtgatggctggtggtgtgctttgtcacccagactttccagttgcgg
ttgcaactcgtttggagctgaaggttcttgtcttggatattaaaaccccaattttaatgg
gctctcagttggaatttcacacacaccattcaaaggaggctgcaacaattgtaaagatac
tgtcgttgctcgatccaaagactggaaaagtaacgaagacagctccccgttgtgtaacag
caaagcagagtgcagtactggaggtggctttgagtggagcagtatgcgtggaagagttct
caaattgcagagctcttgggagagcgtttttaagagcaatgggaagaactcttgctgtag
gcattgtaacccgagtaataaaggagcatgaatag
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