Vitis riparia (riverbank grape): 117911077
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Entry
117911077 CDS
T07274
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117911077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117911077
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117911077
Spliceosome [BR:
vri03041
]
Complex A
U2 snRNP components
U2 related factors
117911077
Complex B
117911077
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
117911077
NCBI-ProteinID:
XP_034681145
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All DBs
Position
3:2812739..2816882
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AA seq
1147 aa
AA seq
DB search
MEKSRREDSDLKKSHRDRDRNGERHRERERDKEKKEHRESRRSEREKSSDDKHREKERDK
HRDKRDKERTRSSRDDERDRARERTKDREKERDRDHEGRDAEREKERERDKESRERAREK
EREDREREREREKEREREKAREREREKEREREKEREREREREREKRDREREDREREKERD
RERLREREKRREPDRNDSSDGDDVRDRDRKRRRRDDDYKDRERDRSGRSNRHRDEGEDSP
RKKSDDDDLDKKERRTREEDLEEEQRKLDEEMEKRRRRVQEWQELKRKREESEREKLGEA
ANADEPKSGKTWTLEGESDDEDVAPTGNSETDLNMDEDAKPTDNEVGDGMAIDSQNGTSA
STLQNGDEGADGDEEIDPLDAFMNSMVLPEVEKLNNAAVSPTSNAVVPSEDSDSDYGDLE
NNEDPLEEEDDDEFMKRVKKTKAERLSIVDHSKIDYKPFRKNFYIEVKESARMTPEEIAA
YRKQLELKIHGKDVPKPVKTWHQTGLTTKILDTIKKLNYERPMPIQAQALPIIMSGRDCI
GIAKTGSGKTLAFVLPMLRHIKDQPPVMPGDGPIGLIMAPTRELVQQIHSDIKKFAKVVG
ISCVPVYGGSGVAQQISELKRGAEVVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR
MFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARRVLNKPVEIQVGGRSVVNKDI
SQLVEVRPESERFFRLLELLGEWYEKGKILIFVHSQEKCDSLFRDLLKHGYPCLSLHGAK
DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRA
GRKGSAITFISDDDARYAPDLVKALELSEQVVPDDLKALADGFMAKVNQGLEQAHGTGYG
GSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSDDEDEGVRKAGGDISQQAALAQIAAI
AAASKVGSVSMPSTVPASQLLPNGGLPVSLSGVLGLTMPGTVAAAVPGSVLPMTPNDGAA
RAAALAAAINLQHNLAKIQADAMPEHYEAELEINDFPQNARWRVTHKDTLIPISEWTGAA
ITTRGQYYTTGKVPGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTIQAISNPSAVQP
GKYSVVK
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggagaaatctagaagggaagattcagatttgaagaagagtcaccgggatcgggatcgg
aatggagagagacacagggagagggagagagacaaggagaagaaagagcaccgggagagt
cggcgctcggagagagagaagagtagtgatgacaagcatagggagaaggagagggataag
cacagggataagcgggacaaggaacgaacaaggagcagccgggatgatgaacgagataga
gcgagagaaagaaccaaggacagagaaaaggagagggacagggaccatgaaggtcgagat
gctgaaagagagaaggagagagagagggataaggagagcagagagagggcaagggagaaa
gaacgtgaggatagagagagggagcgagaacgagagaaggaaagagagagggagaaggca
agggagagggagagggagaaggagagggaaagagagaaggagagggagagagagagagaa
agagaaagagagaagagagatagggagagggaagatagagagagagagaaggaaagagat
agagagaggttacgggaaagggaaaagcgtcgggagcctgataggaatgatagtagtgat
ggtgatgatgtcagagaccgtgatagaaagcggcgcaggagagatgatgattacaaggat
agagagcgtgatcggagtggcaggtctaacaggcacagagatgaaggtgaagacagccct
agaaagaagagcgatgatgatgatttggataagaaagagagaagaactcgagaagaggat
ttagaggaagaacaacggaaactggatgaggaaatggaaaaacggaggagaagagttcag
gagtggcaagaattaaagagaaagagggaagaatctgagagagaaaagctgggagaggct
gcaaatgctgatgagcccaagtctggcaagacctggaccctagaaggagaatctgatgat
gaagatgttgccccaaccggcaattctgagacagatttgaacatggatgaagatgccaag
cccactgataatgaagttggagatggtatggcaatagattctcaaaatggaacttctgca
tccactctgcagaatggggatgaaggtgctgatggagatgaggaaattgatccattagat
gctttcatgaattctatggtgttgcctgaagtagagaagctaaacaatgctgcagtttct
ccaactagcaatgctgtggttcccagtgaagattctgattcagactatggtgaccttgaa
aacaatgaagatcctttggaggaagaagatgatgatgagttcatgaaaagggtgaaaaag
acaaaggctgagagactatcaattgttgaccactcaaaaatagattataaaccattccgg
aaaaatttctatattgaagtaaaggagagtgcaaggatgactcctgaagagattgctgct
tacaggaaacagttggaattgaagatacatggcaaggatgtgccaaagccagtgaaaacc
tggcaccagaccgggctgacaactaaaatcttagacaccataaaaaagcttaactatgaa
agaccaatgccaattcaagctcaggcacttccaataattatgagtggtcgagactgcata
ggtattgcaaagactggctctggtaaaaccctagcatttgtgttgccaatgttgaggcat
atcaaggaccagccacctgtgatgcctggagatgggcctattggccttataatggcacct
acaagggagcttgtccagcagatccatagtgacatcaagaagtttgccaaagtagtgggt
attagctgtgtgcctgtgtatgggggttctggtgttgcacaacaaattagtgaattaaag
cggggggctgaggttgttgtctgcactccagggagaatgattgatatactttgtacaagt
ggcggaaaaattacaaatttgcgtagggtgacatatttggtcatggatgaagctgatcga
atgttcgacatgggttttgaacctcagatcactagaattgttcaaaatactcgacctgac
cgtcaaactgtgctattctctgccactttccctcgtcaggttgaaattttggcccgtaga
gtgttgaacaaacctgtggaaatacaggttggtgggagaagtgttgtgaataaggacata
agccagttggtcgaggtgagacctgaaagtgaaaggttcttcagactgttagaactacta
ggagaatggtatgaaaaaggaaaaattttgatatttgttcactcgcaggaaaaatgtgat
tctctgttcagggatttgcttaagcatggttatccttgcctctcacttcatggagctaag
gatcagacagaccgtgaatccaccatttctgatttcaagagtaatgtatgcaatttgttg
attgcaacaagtgttgctgccaggggtttagatgtgaaggagttagagttggtaattaat
tttgatgttccaaaccattatgaagactatgttcatcgtgttggtcggacaggtagagct
ggccggaaaggctctgctatcacatttatctctgatgacgatgcaagatatgcaccagat
ctagtgaaagccttggagctctctgagcaagttgttcctgatgacctgaaagctcttgcg
gatggttttatggcaaaagtgaatcagggacttgagcaagcccatgggactgggtatggt
ggaagtggttttaaatttaatgaagaggaggatgaagtcaggagagcagcaaagaaagct
caggcaaaagaatatggctttgaggaagacaagtcagactcagatgatgaagatgaaggg
gtccgaaaggcaggtggtgacatctcacagcaagctgcccttgctcaaatagctgctatt
gctgctgcctccaaagttggttccgtttcaatgccaagcactgttccagcttctcaactg
cttccaaatggtgggctccctgtatctctgtcaggtgtccttggtttgacaatgccaggc
actgtagcagcagctgtgccggggtctgtgctgccaatgacccctaatgatggggcagct
cgggcagcagccttggctgctgccatcaacttgcaacacaaccttgcaaagattcaagct
gatgcaatgcctgaacattatgaagctgagttggagattaatgatttcccccagaatgct
agatggagggtgacccacaaagatactttgattccaatttcagaatggaccggagctgcc
attaccacaagggggcagtactatacaacaggtaaggtcccaggaccaggagagcgcaag
ctctacttgttcattgagggccctactgaacaatctgtcaagagagcaaaagcagaacta
aaacgtgtcttggaggacttcacaattcaggctatttcaaatcctagtgcagtccaacca
ggcaaatactctgttgtgaaataa
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