Vitis riparia (riverbank grape): 117911104
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Entry
117911104 CDS
T07274
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC117911104
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117911104
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
vri01001
]
117911104
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117911104
Enzymes [BR:
vri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
117911104
Protein kinases [BR:
vri01001
]
Serine/threonine kinases: Other
PIKK family [OT]
117911104
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
117911104
mRNA cycle factors
Common to processing body (P body) and stress granule
117911104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PI3_PI4_kinase
FATC
FRB_dom
Phage_pb10_N
APG12
Motif
Other DBs
NCBI-GeneID:
117911104
NCBI-ProteinID:
XP_034681190
LinkDB
All DBs
Position
3:complement(4186000..4206469)
Genome browser
AA seq
1994 aa
AA seq
DB search
MKVMGKFCFVQSKLYPRLIQDVQLMINELENVTVLWEELWLSTLQDLHSDVMRRINLLKE
EAARIAENVTLSQGEKNKINAAKYSAMMAPVVVALERRLASTSRKPETPHEIWFHEEYRE
QLKSAILTFKTPPASSAALGDVWRPFDNIAASLSSYQRKSSISLXEVAPQLALLSSSDVP
MPGLERQIIASESDRGLTATLQGIVTIASFSEQVAILSTKTKPKKIVILGSDGHKYTYLL
KGREDLRLDARIMQLLQAFNGFLRSSPETRSHSLVIRYYSVTPISGRAGLIQWVDNVISI
YSIFKSWQNRAQLAHLSSLGAGNTKNSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRD
WPHEVKRKVLLDLMKEAPRQLLHQELWCASEGFKAFSLKLKRYSGSVAAMSMVGHILGLG
DRHLDNILMDFFTGDIVHIDYNVCFDKGQRLKIPEIVPFRLTQMIETALGLTGIEGTFRA
NCEAVVGVLRKNKDILLMLLEVFVWDPLVEWTRGDFHDDAAIGGEERKGMELAVSLSLFA
SRVQEIRVPLQEHHDLLLATLPAVESALERFSDILNKYELVSALFYRADQERSNLILHET
SAKSIVAEATCNSEKTRASFEIQAREFAQAKAVVAEMAQEATTWMEQHGRILEALRSSLI
PEIKACINLSSMQDALSLTSAVLVAGVPLTIVPEPTQAQCHDIDREVSQLIAELDHGLSC
SVTALQAYSLALQRILPLNYLTTSPLHGWAQVLQLSSSTLSSDILSITIRQAAELVAKVN
GDDFDSIKCDHDDLCLKVEKYAVEIEKVEEECAELVNSIGSETESKAKDRLLSAFMKYMQ
SAGLARKEDTISSVQLGQFKHDGTKEARFQGALEEKKDKVLYILSIAVSSLYDEVTHRVL
GIFSNLAERSSADNWLQSDFGTIFCKFEEQVEKCILVAGFANELQQVINGDMPTVRTDIE
HSRYYSERNWASIFRTSLLSCKGLVGKMTEDILPDVIKSIVSFNSEVMDAFGSLSQIRGS
IDMALEQLVEVEIERASLVELEQNYFLKVGVITEQQLALEEAALKGRDHLSWEEAEELAS
QEEACRAQLDQLHQTWNQKDKRTSSLIKKEAVIKNALVSSKRLFQSLIIDGEEREPQGRG
GKGLLAKLVKPFSELESIDKALSSFGGSVAFYSRAIPNPADLMSSAYPMSEYIWKFDSLL
NSHTFFVWEIGVMDSFLDSCIHDVTSSVDQSLGFDQLFNVIKKKLEIQLQEHIVQYLKER
VAPILLALLDKEKEHLKQLTEATKELAFDQGKKDLGALKKVQLMLEEYCNAHETASAARS
AASLMKRQVNELREAVLKTSLEIVQMEWMHDVSLTSSHNNRVIWQKFIANDDSLYPIILN
LNRPKLLESMQSAVSKIARSVEFLQACERTSITAEGQLERAMGWACGGPNSSATGNTSTK
SSGIPPEFNDHLTRRRQLLWEVREKASDMIKICVSVLEFEASRDGIFRIPGGDGRTWQQA
YFNALTRLDVTYHSFTRTEQEWKLAQSSVEAASNGLYTATNELCIASVKAKSASADLQST
VLAMRDCAYEASVALSAFSRVTRGHTALTSECGSMLEEVLVITEGLHDVHSLGKEAAAVH
HSLMEDLSKANMVLLPLESVLSKDVAAMTDAMTRERETKLEISPIHGQAIYQSYCLRIRE
ACPAFKPLVPSLTFSVKGLYSMLTRLARTASLHAGNLHKALEGLGESQEVRSQEINLSRT
NLASDASQSGNKDREIFSRSDEGNAEDLLGVAGLSLQDKGWISPPDSVYSSSSESVIISD
EASLPDSHTAPAEMMARLSYGSNSREGTDYLNSVSSSGTDFQEISLNCGQSESKYTEYDN
SDASSVKSPTNEPSEHLKAAASPKNESITVIDTSKSLNEEDFEGKDETSSSNQVKIEDEN
REARLPNTDAGSRIARGKNAYAISVLRRVEMKLDGRDIADNREISIAEQVDYLLKQATSI
DNLCNMYEGWTPWI
NT seq
5985 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtaatgggaaaattttgttttgtgcagagtaagctttacccaagactaattcag
gatgttcagctcatgatcaatgaactagaaaatgtaactgttctttgggaggagctatgg
ctcagcacacttcaagatcttcactcagatgtgatgaggcgcataaatttgctgaaagag
gaagctgcacgaattgcagaaaatgtcactcttagccagggtgagaagaacaaaataaat
gctgcaaaatactctgccatgatggctccagttgttgtggccttggaacgtcgtctagct
tcaacttctcggaaacctgaaacccctcatgagatatggttccatgaggagtacagagaa
caactcaaatcagccatcttaacctttaaaactcctccagcatctagtgctgcacttgga
gatgtgtggcgaccatttgataatattgctgcatccttgtcatcttaccaaaggaagtca
tcaatttccttgngagaagttgcaccacaattggctctgttatcatcttctgatgttcca
atgcctggtcttgagaggcaaatcatagcatctgaatctgatcgaggcctcactgctact
ctccagggaattgtcacaattgcttctttctctgagcaggtggctatcttatccaccaaa
acaaagcctaaaaaaattgttatactgggctcagatggtcacaagtacacatatctcttg
aaagggcgagaagatctgcgtcttgatgccagaatcatgcagctgctgcaagcgtttaat
ggttttctgcgttcatctcctgaaactcgtagtcattctcttgtcattcgctactattcc
gtgacaccaattagtggtcgggctggacttatccagtgggtggacaatgtgataagtatt
tatagtatctttaagtcttggcagaatcgtgcccagctggcacatctctcttctttaggt
gctggtaatacaaaaaattcagttcccccacctgttccccggccaagtgacatgttctat
ggtaaaattataccagcactgaaagagaaaggtataagaagagtaatttcacgaagagac
tggcctcatgaagtgaagagaaaggttcttctggatctcatgaaggaggctcctaggcag
cttcttcatcaagaactttggtgcgctagtgaaggattcaaagctttcagcttaaaattg
aagaggtattctggaagtgtagcagccatgagtatggttggccacattctgggcctgggt
gatagacatttggataacattcttatggatttctttactggggatattgtacatattgat
tacaatgtgtgcttcgataaggggcaaaggttaaagattccagagattgttcccttccgt
cttacccagatgattgaaacagctttagggctgactggaattgaaggcaccttcagagca
aactgtgaagcagttgttggtgttctgaggaagaataaagatatactcttaatgttatta
gaggtatttgtttgggatccacttgtagaatggacacggggagattttcatgatgatgca
gcaattggtggtgaggaaagaaagggaatggagttggcggttagtttaagtttatttgca
tctcgggtgcaagaaatccgggttcctttacaggaacatcatgatcttttattggctacc
ttaccagctgttgaatctgctcttgagaggttttcagacattctaaacaaatacgagctt
gtttctgctcttttttatcgtgctgaccaagagagatcaaaccttattctgcatgagaca
tctgcaaagtcaattgttgctgaggcaacttgtaattcagagaaaactcgtgcatcattt
gaaatacaggcacgtgagtttgctcaagcaaaggctgtggtagctgagatggctcaagaa
gcaactacttggatggagcaacatggaaggattcttgaggctttacgaagcagtttgata
ccagaaatcaaagcatgcataaacctgagtagtatgcaagatgctttatctcttacatct
gctgtattagtggcaggggttccattgaccattgttcctgagcccactcaagcacaatgc
catgatatagatagggaagtttctcagctcatagctgagttggatcatggactctcttgt
tctgtaacagccctccaagcatattctttggctttacaaagaatcctaccattaaattac
ctcacgacaagcccactacatggctgggcacaggttctgcaactgtcttcaagtaccctt
tcttctgatatcctctccattactataagacaggctgctgaacttgttgcaaaggtaaat
ggggatgattttgattctattaaatgcgatcatgatgacctttgtcttaaggtggagaaa
tatgctgtagagatagagaaagttgaagaagagtgtgctgaactggtaaactccattggt
tcagagactgaatcaaaagccaaggatcgccttctatctgccttcatgaaatacatgcag
tctgctggtcttgcaaggaaggaagataccatctcttctgtgcaattaggacaatttaaa
catgatggtacaaaggaggccagatttcaaggagcacttgaagagaagaaggacaaggtg
ttatatattttgagtatagctgtaagctctctgtatgatgaggttacgcatagggttctg
ggcatttttagtaatttggctgaaagaagcagtgcagataactggttgcagtctgatttt
ggaactattttctgcaaatttgaagagcaagtagagaaatgcatacttgtagcaggattt
gctaatgaattgcagcaagtaatcaatggggatatgcctactgttcgtacagatatagaa
cattcaagatattattcagaaaggaactgggcttccatttttagaacaagtttactttcc
tgtaagggcttggtggggaaaatgactgaagatattttaccagatgtaattaaatccatt
gtttcatttaactcggaagtaatggatgcatttggatccctctcacaaatccgggggtct
attgatatggcactggaacagcttgttgaggttgaaatcgagagagcttctttagtagaa
ctggagcagaattactttctcaaggttggtgtcattactgagcaacaattggctcttgaa
gaggctgctttgaagggtagggatcatctttcttgggaagaggcagaagagctagcttcc
caagaagaagcttgtagggcacagctggaccaactccatcaaacatggaatcagaaggac
aagaggacttcttctctgattaagaaggaagctgttattaaaaatgccttggtttcttca
aaacgcctatttcaatctcttattattgatggtgaggaaagggagcctcaaggtaggggt
ggcaaaggtctattggcaaaactagttaagcccttctctgagttagaatcaattgataaa
gcgctctcttcatttggtggttctgttgctttctactcaagggcaattcctaatcctgca
gatttgatgagttctgcatatccaatgtctgaatatatctggaagtttgacagcttgctg
aacagccatactttctttgtttgggaaattggtgttatggattcttttcttgattcatgc
atacatgatgtaacttcatctgtagatcaaagtttaggattcgaccagctcttcaatgtt
atcaagaaaaaacttgaaatccaacttcaagaacatattgttcagtaccttaaagagcgt
gtagctcctattctattggctttgttagataaagaaaaggagcatttgaagcaattgaca
gaggcaacaaaggaacttgcttttgatcaagggaaaaaagatcttggggctctgaaaaag
gtgcaactcatgcttgaggaatactgcaatgcacatgaaactgccagtgcagcaagatca
gcagcttctcttatgaaaaggcaggtgaatgagcttcgggaggctgttctcaagactagc
ctagagattgttcaaatggagtggatgcacgatgtttcgttgacctcatcacataataac
agggtcatatggcagaagtttattgcaaatgatgatagcttgtatcccattatcctgaac
ctaaacagacccaaattattggaaagtatgcaatctgctgtatcaaaaatagctaggtca
gtggaattcctgcaagcctgtgaaagaacttccataacagcagaaggacagcttgagaga
gccatgggatgggcctgtggtggcccaaattcaagtgcaactggaaacacctcaactaag
agttctggaattcctcctgaattcaatgatcaccttacgaggcgaagacaattattatgg
gaagttcgagaaaaggcatccgatatgatcaaaatttgtgtatcagtattggagtttgaa
gcatcaagagatggcatctttcggattcctggtggtgatggcaggacatggcagcaagct
tacttcaatgcactaacaagactagatgtcacttatcattcatttacacgtactgagcaa
gaatggaaacttgcacaaagcagtgtggaagctgcttcaaatggcttgtatactgcaact
aatgaactctgcattgcttctgttaaagcaaagtcggcatcagctgatttacaaagcact
gttcttgcaatgagggattgtgcctatgaagccagtgttgctctctctgcttttagtcgt
gttacaaggggccatactgctttgacttctgaatgcggttccatgcttgaagaggttctg
gtaattactgaaggtctccatgatgttcatagtttaggaaaggaggctgctgcagtacac
cattctctcatggaagatctttcaaaggcaaatatggtccttcttccacttgaatcagtg
ttgtctaaggatgtagcagctatgactgatgctatgactcgagaaagagagaccaagttg
gaaatatcccccattcatggtcaagccatttaccagtcctattgtttaaggattagagag
gcttgtccggcctttaagcccttggtaccatcacttacattctctgtgaagggactctat
tccatgttaaccaggctggcacgcactgcaagtctacatgctgggaatcttcataaagca
cttgaaggactaggagaaagccaagaagttaggtcccaagaaattaatttgtcaaggaca
aacctcgcaagtgatgcctctcaatccggtaacaaagacagagagatcttctccagatct
gatgagggaaatgctgaggatttgcttggtgtagctggattgtccttgcaagataaaggc
tggatatccccaccagatagtgtctatagtagcagctcagaatctgtcatcatctcagat
gaagcaagtcttccagatagccacactgctccagcagaaatgatggcacggctctcatat
gggtctaatagcagagagggcacagattacttgaactctgtttcatcttctgggactgat
ttccaagaaatctcattgaattgtgggcagtcagagtctaagtacacggagtacgataac
agcgatgctagttctgtcaaatctccaactaatgagccaagtgaacatctgaaagctgcg
gcatcaccaaagaatgaatccataactgtcattgacacttccaagtctttgaatgaggaa
gactttgagggtaaagatgaaacatcctcatcaaatcaagttaagattgaagatgaaaat
cgggaggcccgacttcctaatacagatgctggcagccgaatagcccgaggtaaaaatgcc
tatgcaatttcagttctaaggcgagttgagatgaaactagatggccgagatattgctgac
aacagagaaattagtattgcagagcaagtggattatttactgaagcaagccacaagtata
gataatctctgcaacatgtatgaaggttggacgccctggatttga
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integrated database retrieval system
