Vitis riparia (riverbank grape): 117911693
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Entry
117911693 CDS
T07274
Name
(RefSeq) LOW QUALITY PROTEIN: transportin-1-like
KO
K18752
transportin-1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117911693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117911693
03009 Ribosome biogenesis [BR:
vri03009
]
117911693
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117911693
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
117911693
Pre-60S particles
117911693
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
TPR_IPO5
HEAT_GCN1
HEAT
TPR_IMB1
IBN_N
HEAT_MROH2B_C
TOR1L1_N
HEAT_2
TPR_DNAAF5
HEAT_EF3_N
CLASP_N
PDS5
TIP120
UTP20_N
DUF3689
Usg
Motif
Other DBs
NCBI-GeneID:
117911693
NCBI-ProteinID:
XP_034681985
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All DBs
Position
3:1827147..1888187
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AA seq
890 aa
AA seq
DB search
MAATASWQPQEEGFNSICALLQHQISPSSDKSQIWQQLQHFSHFPDFNNYLVFILARAEG
QSVEVRQAAGLLLKNNLRTAFNSMTPAYQLYIKSELLPCLGAADSXIRSTAGTIITVLVQ
LGGVSGWPELLQALANCLESNDLNHMEGAMDALSKICEDVPQVLDSDVPGLVERPINLFL
PKLFQFFQSPHASLRKLSLGSVNQYIMLMPAALFASMDQYLQGLFVLAHDSAAEVRKLVC
AAFVQLIEVNPSFLEPHLRNVIEYMLQVNKDSDDEVALEACEFWSAYCDAQLPLENLREF
LPRLIPVLLSNMAYAEDDESLAEAEEDESLPDRDQDLKPRFHSSRFHGSDNAEDDDDDIV
NIWNLRKCSAAGLDVLSNVFGDEILPTMMPIVQAKLSTTDDETWKEREAAVLALGAVAEG
CITGLYPHLSEIVTFIIPLLDDKFPLIRSIXCWTLSRFSRFVVQGIGHQQGSEQFDKVLR
GLLRRILDTNKRVQEAACSAFATLEEEAAEKLAPHLEIILQHLMCAFGKYQRRNLRIVYD
AIATLADAVGEKLNQPTYLDILMPPLIAKWQQLSNSDKDIFPLLECFTSIAQALGTGFSQ
FAEPVFQRCINIIQTQQLAKIDPASAGVQYDKEFIVCSLDLLSGLAEGLGSGIESLVAQS
SLRDLLLQCCMDDEAPDVRQSAFALLGDLARVCPVHLHPRLSDFLNVAAKQLNTSKLKET
VSVANNACWAIGELAVKVHQEVSPIVMTVISCLVPILQHAEELNKSLIENSAITLGRLAW
VCPEIVSLHMEHFMQSWCTALSMIRDDIEKEDAFRGLCAMVRANPSGALSSLVYMCKAIA
SWHEIRSEDLHNEVCQVLHGYKQMLRNGAWEQCMSALEPPVKDKLSKYQV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacagcctcgtggcagcctcaagaggaaggcttcaattcgatctgtgcccta
ctccaacaccaaatctctccttcctccgataagtctcagatttggcagcagctccagcac
ttctctcacttccccgatttcaacaactacctcgtcttcattctcgcccgcgctgagggt
caatcagtggaggttcgacaggctgctggtttgcttctgaaaaataaccttagaactgca
ttcaattccatgactcctgcgtaccagctctatataaaatcagagctgttgccctgttta
ggggcggcagatagcnacattaggtctacagctggaaccattataactgtacttgttcag
ctggggggagtttctggatggcctgagctcttgcaagctcttgctaattgcttggaaagt
aacgacttaaatcatatggaaggtgctatggatgctttgtctaagatctgtgaggatgtt
cctcaagtgcttgattcagatgtgcctgggttagttgaacgccccatcaacttatttctt
ccgaaattattccagttttttcaatcaccacatgcctcactaagaaagctttcattgggt
tccgtaaaccagtacattatgttgatgcccgctgcattatttgcttccatggatcaatat
cttcaaggtttgtttgttctcgctcatgactctgctgcagaggttcggaaattggtttgt
gcagcattcgtgcagctaattgaagttaatccatctttcttggagccgcatttgaggaat
gtaatcgagtacatgctacaagtcaataaggatagtgatgatgaagtggctcttgaagct
tgtgaattttggtctgcatattgtgatgcacagttaccacttgagaacttgagagaattc
ttgccacgtctaatcccagttttgttatcaaatatggcttatgctgaagatgatgaatca
cttgctgaagccgaggaggatgagtctcttccggaccgcgatcaggatttgaaacctcgc
tttcattcttctcggtttcatggatcagataatgcagaagatgatgatgatgacatagtc
aacatttggaatttacggaaatgcagtgcagctgggctagatgttctctcaaatgtgttt
ggggatgagattcttccaacaatgatgccaatagtgcaggctaagttatcaactactgat
gatgagacctggaaagaaagggaagctgctgttttagctcttggtgctgtagctgagggt
tgcattactggtctttatcctcatttatcagagattgtgacatttattatccccctcttg
gatgataagtttcctctcatacgaagtattncctgttggacgctttctcgtttcagcaga
tttgttgttcagggtattggtcatcagcaaggctctgaacagtttgacaaagttcttagg
ggtcttctacgaaggatattggataccaacaagcgggtgcaagaggctgcttgttcagct
tttgccacactcgaagaggaggctgcagaaaagttagcaccacacttggaaattattcta
caacacctaatgtgtgcttttgggaagtaccagagacgaaatctcagaatcgtatatgat
gctattgcaactttagcagatgctgtaggagagaaactaaatcagcccacctatcttgat
attctaatgccgccattgatcgcgaagtggcagcaactttctaattcagataaagacatt
ttcccactgctggagtgctttacatctatagcacaggcattgggtaccgggttttctcaa
tttgctgagcctgtctttcagaggtgcataaacatcatccagacacaacaattggcaaag
attgatcctgcttcagctggtgttcagtatgataaagagtttattgtatgctctctcgac
ttgctgtctggacttgcagaaggtcttggtagtgggatagagagtttggttgcgcaaagc
agcttgagggatctcctcctgcaatgttgtatggatgatgaggcaccagatgttcgacaa
agtgcctttgcacttctgggtgatctggcaagagtgtgtcctgttcatttgcaccctcgt
ttgtctgattttctcaatgttgcggccaagcaactgaacacttctaagctgaaggaaact
gtttcagtggcaaataatgcctgttgggcaattggagaattagcagttaaggttcatcaa
gaagtttctccaattgtgatgacagttatctcatgcttagttccgatacttcaacatgct
gaggagctcaacaagtcactcatagaaaatagtgccatcacccttgggaggcttgcttgg
gtctgtccagaaattgtgtcactgcatatggagcattttatgcaatcatggtgtactgct
ttatccatgatacgtgatgatattgaaaaggaagatgctttccgaggcctatgtgccatg
gttagagcaaatccatctggcgcccttagttcacttgtttacatgtgcaaagctattgca
agttggcatgaaataaggagtgaggacctacacaatgaagtttgccaggtgttgcatggt
tataaacagatgcttaggaatggagcatgggaacagtgcatgtctgccttggaacctcca
gtgaaggacaagctgtcaaaatatcaagtatag
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