Vitis riparia (riverbank grape): 117912057
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Entry
117912057 CDS
T07274
Name
(RefSeq) vacuolar sorting protein 39 isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04142
Lysosome biogenesis
vri04145
Phagocytosis
vri04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
117912057
04142 Lysosome biogenesis
117912057
04148 Efferocytosis
117912057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vri04131
]
117912057
Membrane trafficking [BR:
vri04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
117912057
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
TPR_WDR35
AlaDh_PNT_N
zf-HC5HC2H_2
DUF2175
Motif
Other DBs
NCBI-GeneID:
117912057
NCBI-ProteinID:
XP_034682390
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All DBs
Position
4:18931291..18949483
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AA seq
1005 aa
AA seq
DB search
MVHSAYDSFELLNNCPTRIETIESYGAKLFLGCSDGSLRIYGPESFSFDRSPPSDPNALE
LRKEPYVLERTVTGFSKKPLVAMEVSGTRDLLLSLSESIAFHRLPNLETIAVITKAKGAN
VYSWDDRRGFLSFARQKRVCIFRHDGGRGFVEVKEFGVPDFVKSMSWCGENICLGIRREY
MILNATNGALSEIFPSGRIAPPLVVSLPSGELLLGKDNIGVFVDQNGKLLQEGRICWSEA
PKVVVIQKPYAIALLQRHVEIRSLRVPYPLIQTVVLRNMCHLHQSNNAILVAVDNSVYGL
FPVPLGAQIVQLTASGDFEEALALCKMLPPEDASLRAAKEGSIHIRYAHYLFENGSYEEA
MDQFLASQVDITYVLSLYPSIVLPKSVVLPEPEKLMENVWDASHLSRGSSGVSDDMESSP
PPQLLESEENAVLESKKMSHNTLMALIKFLQKKRYNIIEKATAERTEEVVLDAVGDNFAS
YDSTRSKKSNKGRVNIAISSGARETAAILDTALLQALLLTGQSSAALELLKSLNYCDMKI
CEEILQKRNHHTALLELYKCNGMHHDALKLLHQLVEDSKSDQPQAELSQKFKPEMIIEYL
KPLCATEPMLVLEFSMLVLESCPSQTIDLFLSGNIPADLVNSYLKQHAPNMQAMYLELML
AMNEHGISGNLQNEMVQIYLSEVLEWHADLSAQGKWDEKAYSPTRKKLLSALESISGYNP
EGLLKRLPPDALYEERAILLGKMNLHEFALSLYVHKLHVPELALSYCDRVYESVLHQTSG
KTSGNIYLTLLQIYLNPRRTTKNFEKRITSLVSSQNTSIPKVSSGTSVKAKGGRLGKKIA
EIEGAEDMRVISSTDSGRSDGDADEPSEEGGSSIMLDEVLDLLSRRWDRIHGAQALKLLP
RETKLQNLLPFLGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELHNQRKTVVRISSDSMC
SLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVVKSSPLRKR
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggtacacagtgcctatgattccttcgagctcctcaataattgtccgaccaggatcgag
accatcgaatcgtacggggccaagctcttcctaggatgcagcgacggatctctccgaatc
tacggtccagaatccttcagcttcgaccgatcgccgccctccgatcccaatgccttagag
ctgcgaaaggaaccatatgtactagagagaaccgtgactgggttctcgaagaagcccttg
gtggcaatggaagtctcgggtacgagagaccttcttctgtcgctctcggaatctatcgca
tttcaccggcttcccaatttagagacaattgccgtgatcaccaaggcaaaaggcgctaat
gtgtattcgtgggacgatcggagagggttcttgtcctttgccaggcaaaagagagtctgt
attttcaggcacgatgggggccggggatttgtggaggttaaagaatttggtgttccagat
tttgtgaagtcaatgtcttggtgtggtgaaaatatatgtttggggattagaagagaatat
atgatattgaatgccacaaacggtgcattgtctgagatatttccttctgggaggattgcc
ccacctttagtggtctcccttccttctggagaacttcttcttgggaaggacaacattggg
gtttttgtggaccaaaatgggaagcttcttcaagagggcaggatttgttggtctgaggcc
cctaaagttgttgtcattcagaagccatatgcaatagctctcttacagagacatgttgag
atacggtccctccgagttccatatccattgatacaaactgtggttctccgcaatatgtgt
catcttcaccagagtaacaatgccatacttgttgcagtagacaactctgtttatgggcta
ttccctgttcctctaggagcacagattgtacaactaacagcgtctggtgattttgaggaa
gctttggctttgtgcaaaatgcttccaccagaagatgcaagcctccgagctgcaaaggag
gggtcaattcatataaggtatgcacactatctgtttgaaaatgggagctatgaagaggcc
atggaccagtttttggcatctcaagtagatatcacctatgtgctttctttgtatccatcc
attgttcttcccaaatcagttgtgcttcctgagcctgagaagctgatggagaatgtttgg
gatgcttcacatctctcaagaggttcatctggtgtctcagatgatatggaatcctcacct
cctccacagctattggaatctgaagaaaatgcagtacttgagtcaaagaaaatgagccac
aacactctcatggctcttatcaagttcttgcaaaagaagagatacaatataattgagaag
gccactgctgagagaacggaggaggttgttttagatgctgttggagataattttgcatct
tatgattcaactaggtctaaaaaatcaaacaaggggcgtgttaacattgccatcagctca
ggtgctagggagacagcagcaatactagatacagcactactccaagccctgcttcttact
ggacagtcttcagctgctttggaattactgaaaagtcttaactactgcgatatgaaaata
tgtgaagagattcttcagaaaagaaatcatcacactgctctgttagaactttacaagtgc
aatggaatgcatcatgatgctctcaaacttttgcatcaattggtagaagattcaaagtca
gaccaaccacaagctgaactaagccaaaaattcaagcctgaaatgataattgaatatctc
aagcctctgtgtgcaaccgaacctatgcttgtcttggagttctcaatgcttgttcttgaa
agctgtccatcacaaactattgatctctttttgtctggaaatattccggcggacttggtc
aactcttacttaaaacagcatgctccaaacatgcaagccatgtacttagagcttatgctt
gccatgaatgaacatgggatctctggaaatctgcagaatgagatggtgcaaatctatcta
tcagaagtacttgaatggcatgcagatttatctgctcaggggaaatgggacgagaaagct
tattcccctacaaggaagaaattattgtctgctttggaaagtatctcaggttataaccct
gagggtttgttgaagcgtcttcccccagatgctttatatgaagagcgtgcaattttgctg
ggcaaaatgaacctgcatgagtttgccttatctctgtatgtccataagcttcatgttcct
gaactggcactgtcctattgtgatcgtgtatatgagtccgtacttcatcaaacttcagga
aaaacttctggcaatatatacctcactcttttgcaaatctatttgaaccctcgaaggaca
acaaagaactttgaaaagagaattactagtctagtatcatctcagaatacaagcattccg
aaggtcagttcaggaacatcagttaaagctaaaggaggtcgtttgggtaagaaaattgct
gagattgagggtgcagaagacatgcgagttatcagcagcactgatagcgggaggagtgat
ggtgatgcagatgaacctagtgaggaaggaggttctagcatcatgcttgatgaggtcctt
gatctgttgagccgaaggtgggatagaatccatggagcacaggccctcaaactcttaccg
agggaaactaaattgcagaacttgcttccatttcttgggcctctcctgaggaaatccagt
gaagcatacaggaatctatcagtgatcaagagtcttagacagagtgagaatttgcaggta
aaggatgaactccacaaccagaggaaaacggttgtgaggatcagcagtgacagtatgtgc
tctctctgcaacaagaagatagggacaagtgttttcgctgtctaccccaatgggaagaca
ctggtgcatttcgtttgctttagagactcacagagtatgaaggctgtggttaaaagctct
ccactgagaaagcgttaa
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