Vitis riparia (riverbank grape): 117912180
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Entry
117912180 CDS
T07274
Name
(RefSeq) nijmegen breakage syndrome 1 protein isoform X1
KO
K10867
nibrin
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117912180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vri03032
]
117912180
03400 DNA repair and recombination proteins [BR:
vri03400
]
117912180
DNA replication proteins [BR:
vri03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
117912180
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
117912180
BRCA1-C complex
117912180
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FHA
BRCT
PTCB-BRCT
Nbs1_C
Yop-YscD_cpl
Fer4_13
Motif
Other DBs
NCBI-GeneID:
117912180
NCBI-ProteinID:
XP_034682566
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Position
4:complement(9654723..9773205)
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AA seq
595 aa
AA seq
DB search
MVWGLFPVDPLSGEDSYYIFAKGTYKVGRKGCDVIVKKDKGVSRIHAEIIVDSMISLDPQ
WNKSSNVSSNVRIRDCSKYGTFINKNLGSKEKLHEFPNKETTLKDGDLVSFGTGNATYRF
GFVPLIFFVYRSEPFQMNHSLQDKISSIGASVTRAWSSECTHVLVDQFMLVKEDLVDIFL
AKKPLVLNDWIEFVAEKNIRNEIPSCNDYVPTLTCGGVSVKVGDSISRENCLKGCTFLLE
PAHKYNFGDRLQSLLEASGAKVDSIDGLSSRSQGLEGGENNRVVHVIPACSADKFDSFHN
HRSVSSVKEMNLISAVISGHLDPSTMISPPVLVSSSCSTDETVVADSDAEVETATSSHAN
SAAHTKEVFKYDSKGEISVVADSDAEVETATLIHANAAACTTETIKYDSKGEISVVADSD
AEVETATSIHTNAAVRTAEDIKYDSKREISIGQAANASETGHMTHFRQRNDGVKTRRDKV
DESESGNPDVLYSQDLIVRDINLLTSFSSTKNRIVNFKCFRKAKTQSGNSFNNLIPFAKY
PYKESDNGSDEVMQSVKEEKKRKQMEAIAEDLFNNEKGRRRGVAGSLAGLLTRGR
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggtgtggggtctgtttcccgttgacccactttcaggtgaagatagttactatatcttt
gctaaaggcacatacaaagtgggtcgtaaaggttgtgatgtaattgttaagaaagacaag
ggagtatcccggatccatgcagagataattgttgattcaatgatttccctagatccacag
tggaataaatcttctaacgtatcctccaatgttcggataagagattgctcaaagtatggg
acatttattaacaagaatcttggctcaaaggaaaaacttcatgagttcccaaataaggaa
acaactctaaaagatggggacttggtttcatttggcactggtaatgcaacctacaggttt
ggttttgtcccgctcatattttttgtttatcgctcagagcctttccaaatgaatcattct
cttcaagataaaatttcatcaataggcgcttctgttactcgtgcatggagttcagagtgc
acacatgtgcttgttgatcagttcatgctggtgaaagaagatttagttgatattttcttg
gccaagaagcctcttgtccttaatgattggattgagtttgttgcagaaaagaatattcga
aatgaaattccaagctgcaatgactatgttccaaccttgacatgcggaggcgtatctgtc
aaagttggcgactctatatctagagaaaactgcttgaaaggatgcacttttttgttggaa
cctgcacacaagtacaactttggggataggttgcagtcactattggaagcaagtggtgcc
aaggttgattcgattgatggattgtcttcaagaagccaaggcttggagggaggagaaaat
aatcgggtggtgcatgtaatccctgcatgttcagcagacaagtttgattccttccataac
cacagatctgtatcaagtgtgaaagagatgaatttgattagtgctgttatatctggacat
ctggatccttctactatgatatcgccacctgtacttgtctcatcttcatgctccacagat
gagactgtagtagcagattctgatgcagaagttgaaacagccacatcaagtcatgccaat
tctgctgcccacactaaagaagtctttaagtatgatagcaaaggggagatatctgtagta
gctgattctgatgcagaggttgaaacagccacattaattcatgccaatgctgctgcctgc
actacagaaaccattaaatatgatagcaaaggggagatatctgtagtggctgattctgat
gcagaggttgaaacagccacatcaattcataccaatgctgctgtgcgcactgcagaagac
atcaaatatgatagcaaaagggagatatctattggtcaggctgctaatgcatcagagact
ggccacatgacacattttagacaaaggaatgatggtgtaaaaacaagacgagacaaagtt
gatgaatctgaaagtggaaatccagatgttttatacagtcaagatttaattgtgagagat
attaacttgctgacatcattttcttcaacaaaaaatagaattgtaaatttcaaatgcttc
agaaaggcaaagactcaatctgggaatagcttcaacaatcttattccatttgcaaagtac
ccatacaaagaatctgacaatgggagtgatgaagtaatgcaatctgtgaaagaagaaaaa
aagcggaagcaaatggaagcaattgcagaagatttattcaacaatgagaaggggagacga
cgaggagtagctggttctcttgctggccttcttactcgtggtcgatga
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