KEGG   Vitis riparia (riverbank grape): 117912191
Entry
117912191         CDS       T07274                                 
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117912191
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vri03019]
    117912191
Messenger RNA biogenesis [BR:vri03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     117912191
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     117912191
SSDB
Motif
Pfam: EXOSC1 ECR1_N ECR1_N_2 RRP4_S1
Other DBs
NCBI-GeneID: 117912191
NCBI-ProteinID: XP_034682582
LinkDB
Position
4:complement(14144508..14158081)
AA seq 200 aa
MQEREEAEELVTPGEVLGKGSQLKAGRGAYFLPQNDTVYASLTGRRSLIPPSPLSSDQRP
TVEVTGHSAHGAIPEPGSIVIARVTKVMARMASADIMCVGPKSVREKFTGIIRQQDVRAT
EIDKVDMHSSFRPGDIVRALVLSLGDARAYFLSTAKNELGVVSAESTAGATMVPMSWTEM
QCPLTGQIEQRKVAKVGGQA
NT seq 603 nt   +upstreamnt  +downstreamnt
atgcaagaaagagaggaggcagaggagttggtgacgccaggagaggtgttggggaagggt
tcgcaactcaaggcagggaggggagcctacttcttaccccaaaatgacaccgtttatgct
tccctcactggtcgccgctctctcatccctccttctcccctttcatctgaccagaggcca
actgttgaagtaacaggtcatagtgcccatggtgccattcctgagcctggttccattgtc
attgccagggttactaaagttatggctagaatggcctcagctgatataatgtgtgttggc
cccaagtctgtgcgagaaaaatttactggaataattaggcaacaagatgttagagcaaca
gaaatagacaaagtggatatgcactcgtcttttcgccctggtgacattgtcagagctcta
gttctctcccttggagatgcacgggcatactttctatcaactgcaaagaatgaactggga
gttgtatctgcagagagcacagcaggtgcaactatggttccaatgagctggacggagatg
cagtgcccattgacaggacaaatagaacaaagaaaggttgcgaaagttggagggcaagcc
taa

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