Vitis riparia (riverbank grape): 117912191
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Entry
117912191 CDS
T07274
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117912191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117912191
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117912191
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
117912191
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
117912191
NCBI-ProteinID:
XP_034682582
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Position
4:complement(14144508..14158081)
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AA seq
200 aa
AA seq
DB search
MQEREEAEELVTPGEVLGKGSQLKAGRGAYFLPQNDTVYASLTGRRSLIPPSPLSSDQRP
TVEVTGHSAHGAIPEPGSIVIARVTKVMARMASADIMCVGPKSVREKFTGIIRQQDVRAT
EIDKVDMHSSFRPGDIVRALVLSLGDARAYFLSTAKNELGVVSAESTAGATMVPMSWTEM
QCPLTGQIEQRKVAKVGGQA
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaagagaggaggcagaggagttggtgacgccaggagaggtgttggggaagggt
tcgcaactcaaggcagggaggggagcctacttcttaccccaaaatgacaccgtttatgct
tccctcactggtcgccgctctctcatccctccttctcccctttcatctgaccagaggcca
actgttgaagtaacaggtcatagtgcccatggtgccattcctgagcctggttccattgtc
attgccagggttactaaagttatggctagaatggcctcagctgatataatgtgtgttggc
cccaagtctgtgcgagaaaaatttactggaataattaggcaacaagatgttagagcaaca
gaaatagacaaagtggatatgcactcgtcttttcgccctggtgacattgtcagagctcta
gttctctcccttggagatgcacgggcatactttctatcaactgcaaagaatgaactggga
gttgtatctgcagagagcacagcaggtgcaactatggttccaatgagctggacggagatg
cagtgcccattgacaggacaaatagaacaaagaaaggttgcgaaagttggagggcaagcc
taa
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