Vitis riparia (riverbank grape): 117912747
Help
Entry
117912747 CDS
T07274
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri00040
Pentose and glucuronate interconversions
vri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117912747
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117912747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
117912747
NCBI-ProteinID:
XP_034683332
LinkDB
All DBs
Position
1:11888541..11890665
Genome browser
AA seq
443 aa
AA seq
DB search
MAAPKSNSLLLLFVVMFMVVVPTIRAHIAEYDDYWKAREKEAKTVAIDAFDPSPEDVNDD
FNNNVEKSIFGKNGTRRNLKVNKGPCKATNPIDRCWRCRRNWAMDRRRLADCALGFGRRT
VGGKHGRLYIVTDPSDNDMLNPKPGTLRYAVIQPQPLWIVFGRSMIIKLKQELMVTSDKT
IDGRGVNVHIAYGAGITIQFARNVIIHGLHIHDIVSRPGGLIRDSVHHFGLRTRSDGDGI
SIFGSSHVWIDHNSMSKCEDGLVDAIQGSTAITISNNHFTKHNETMLLGASDGYSGDIIM
QVTVAFNHFGRGLIQRMPRCRWGFFHVVNNDYTHWNMYAVGGSAHPTIVSQGNRYVAAPL
MDPKHDAKEVTKRDHATKAEWSKWTWRSEGDLMVNGAFFVESGVPFKKKPFSRYDMIKAK
PGKFVPRLTRYSGALTCWRTSPC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacctaaatccaattcattgcttctcctgtttgtggtgatgttcatggtggta
gtcccaacaatacgagcccacattgcggaatacgatgactactggaaagcgcgggaaaag
gaagccaagacagttgcaatcgacgcatttgatcccagcccagaggatgtcaatgacgat
ttcaacaataatgttgagaaatcgatattcggaaagaatggcacgagaaggaacctgaaa
gtaaacaagggcccatgcaaggcgacaaaccccattgatcgatgctggagatgccgtcgc
aactgggcgatggatcgcaggaggctagccgactgcgcccttggttttgggcggagaaca
gtgggaggaaagcacgggaggttatacattgtgactgatccgtccgacaatgacatgctt
aatcctaagcctggaaccttacgctacgccgtcatccagccacagccactgtggatcgtg
tttgggcgcagtatgataattaagctgaaacaggagctgatggtgaccagtgacaaaacc
attgacggaaggggagtcaatgtccacatcgcatatggtgccggcattacgattcagttc
gccaggaatgtgatcatccatggcctccacattcacgacattgtttcacgcccaggagga
cttattagggattctgtccatcacttcggcttgagaaccaggagcgatggcgatggaatc
tccatctttggctcatcccacgtttggattgaccataactccatgtccaagtgcgaggac
ggcctggtcgatgccatccaaggatccaccgctatcaccatctccaacaaccattttacc
aagcacaatgagacgatgttgttaggcgcaagtgatgggtactcgggcgatatcataatg
caagtgaccgtggcattcaaccatttcgggaggggattgattcaaaggatgccaaggtgc
cgatgggggtttttccatgttgtgaacaacgactacacccactggaacatgtacgctgtg
ggtggtagtgcacatcctaccatagtcagccagggcaaccgatacgtcgccgccccctta
atggatccaaagcatgacgctaaggaggtgaccaagagagaccatgcgacgaaagcagag
tggagcaagtggacatggagatcagagggagatctgatggtaaatggagccttctttgtt
gaatcgggggtgccttttaagaaaaagcctttctccagatatgatatgatcaaagcaaag
ccaggcaaatttgtgcccagactcactcgctactcaggcgcccttacttgctggcgtacc
tcaccctgttaa
DBGET
integrated database retrieval system
