KEGG   Vitis riparia (riverbank grape): 117912797
Entry
117912797         CDS       T07274                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117912797
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vri03021]
    117912797
Enzymes [BR:vri01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     117912797
Transcription machinery [BR:vri03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     117912797
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF2002
Other DBs
NCBI-GeneID: 117912797
NCBI-ProteinID: XP_034683403
LinkDB
Position
4:6926289..6940051
AA seq 1198 aa
MGASDAKGDLGMSSSMGEKLSNGVQMEIDDDLMGSIEIDDLNKEYLKTFCKKVAVSFFNE
YGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERP
RVWAGESDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVE
KKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEFDHGGYFLIKGAEKTFIAQEQICL
KRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPAWILFFA
LGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKS
CKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLE
LAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQW
SHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLS
TPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWV
GVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVK
TFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFLL
GLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMI
SDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH
IRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGR
CAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGV
LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFST
LSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTG
PVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSYMHICRRCKNI
SNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC
NT seq 3597 nt   +upstreamnt  +downstreamnt
atgggggcatctgatgccaagggagatttgggcatgagcagtagtatgggtgaaaagctt
tcaaatggagtccaaatggaaatagatgatgatctgatgggctcaatcgagatagacgac
ttaaacaaagaatatttgaaaacattttgcaaaaaggttgcggtatcattctttaatgag
tatggactcattcagcatcagatcaactccttcaatgacttcatcaaaaatggaattcaa
agggtttttgattcttttggcgagatccctgtggagcctgggtatgacccatctaagagg
ggagagggtgattggagatatgcttctgtgaggttcgggaaggtcacccttgaacggccg
agggtatgggctggtgaatcagatggtaaggagtccctgaattttttgccgagacatgca
cgtcttcagaacatgacgtactcatctcggatgaaagctcaagttcatttccaggtatat
actcagaaacttgtaagaagtgacaagtacaaaactggaaaagacaacaagtatgttgag
aagaaggttatatttgaagataacagggacatattaattgggaggatccctgtgatggtg
aagtcagaactatgttggatgaatggtgtcgagagaggtgactgtgaatttgatcatgga
ggatattttttgatcaagggtgcagagaaaacattcattgcacaagaacagatttgtttg
aagagactgtgggtttccagtaatccaacttggatggttgcataccggccaatctggaaa
aggaaaagagtatatgttaaattagaacctccaaaagatgaaaataatagaggaggagaa
aaagttcttacagtgtatttttcatcaacagagattcccgcttggatattgttttttgca
cttggtgcatcgtcagacaaggaagttgttgatttgattgatttcaacattgatgatgct
ggtatttcaaatattcttgttgcatctattcatgaagcggacagggaagcagaaaagaaa
ggcatgtacttccgtagacaaggcaatgctatcagttttgtagataaacttgtgaaaagt
tgtaaatttcctcctggagagagtattcaagaatgcattagcaagtatttgtttcccaac
tttagtggcgtcaagcaaaaggctcgctttcttgggtatatggtgaagtgtcttctacaa
gcctatactgggcgcagaaaatgtgataacagagatgatttcagaaacaaaagattagaa
ttggctggtgagctgcttgagcgagagcttagagtgcacattagacatgctgaaaggcgc
atggtaaaagctatgcagagagaactttatggagatcgtgacctgcgacctattgaaaat
tatctggatgcctccattatcaccaatggtctttccagggcattctcaactgggcaatgg
tcccatcctttcaagaggatggaaaggatatctggtgtagtggcaactcttagacgaaca
aatcccttgcagatgacagctgacatgaggaaaacacgtcagcaggtccaatacacagga
aaggttggggatgccagatacccacacccttctcactgggggaaggtttgctttctctct
actccggatggtgaaaattgtgggcttgtaaaaaatttggccattacaggacttgtctca
acagaggtattggatccattggttgataaattgtttgattgtggaatggagaaactggta
gatgatacctctaccaagctgtctggaaagaataaagtttttctggatggtgactgggtt
ggagtatgcgaagatcccatttcatttgttgtggagctaagaactaaacggcggcacaag
gaattgcctcaacaggtggaaatcaaaagagacgaacaacaaggagaagttcgcattttt
tctgacgctggaaggattctacgtcctctcttagtagttgagaatttaaaaaaggttaaa
acatttaaaggggatgattttactttccagtctcttttggacaagggaatcgtggagctc
attggagctgaggaagaagaagattgctctacagcatggggcattaaatacctcttaaag
ggacatgatgacccaccggtgaaatacacacattgtgaacttgatatgtcttttttatta
gggttaagttgtggaataatcccttatgcaaatcatgaccatgcaaggagagtactatac
cagtctgagaagcactctcaacaggctattggtttttccacaacgaaccctaatattaga
gtggataccctctctcaccaactatactaccctcagaggccactttttcggacaatgatt
tctgattgtctgggaaaaccaggatattcagaaggtcataaaggaatagtgccaaggcct
gaatacttcaatgggcagattgctattgttgcagttaatgttcacctggggtacaaccaa
gaggactcattggtaatgaaccgggcttcattagagcgtggtatgtttcgttcagagcac
ataagaagttataaatctgaggtcgacaataatgaatcattggacaaaaaacgaaagtcc
gaggactctgtacattttggaaagatgcagagtaaaattggacgtgttgacagccttgat
gatgatggttttccattcatcggtgcaaacctgcagaatggtgatattgtcattggaagg
tgtgcagaatctggggttgatcacagcataaaactgaagcatactgagaggggcatggtt
caaaaggttgtggtgtcagcaaatgatgatggaaagaattttgctgtagtatctctgaga
caggtccgaactccatgccttggagacaagttctcaagcatgcatgggcaaaagggtgtt
ctggggtttctagagtcccaggagaacttccctttcacaatacaaggaatagttccagat
attgtaataaacccacatgcatttccttcacgtcagactcctggtcaattgctagaggct
gctttgggaaaggggattgcctgtggtggtttgctgagacatgccacccctttctccacc
ctctctgtggatgcaatagcagatcaacttcacagggctggattttcaagatggggacat
gaaagggtgtacaatggacgcactggagaaatgcttcgctcactcatatttatggggcca
acattctaccagcgcctgattcacatggctgaggataaagtaaagttccgcaacacgggg
ccagtccacccgctcacccgtcagccagtgtcggatcggaagcgctttggtgggatcaaa
tttggggagatggagcgcgactgcctcattgctcacggtgctgcagcaaatctacatgaa
cgcctcttcaccctcagcgactcatcctatatgcacatctgtcggagatgcaagaacata
tcgaatgtgatccagcgttctgtggcgggtgggcggaaggtaaggggcccgtattgtcga
tactgcgagtcttctgaggaaatagtgaaggtgaacgtgccatatggggcgaagttgttg
tgccaggagctcttcagcatgggcatatctttgaagtttgagacccagctgtgttaa

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