Vitis riparia (riverbank grape): 117912864
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Entry
117912864 CDS
T07274
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117912864
Transcription machinery [BR:
vri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
117912864
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
117912864
NCBI-ProteinID:
XP_034683518
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Position
4:complement(703378..709623)
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AA seq
561 aa
AA seq
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MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCETLYKD
PFKPFACSSGALQTFENDYSEMEEMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ
ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF
DLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTI
RKGPGRPSVSTVKRTLNSRSKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLS
NWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVVYIARNYRGMGVAFEDILQAGNLGV
LQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYK
SHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPE
EGFMRQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRLFNVSKEWIRKLEK
TALAKLRDEEICQNLRHYVDV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgggcatgggtttcaggctaaacctgaaatgggattttccaatcagttgtcctactctc
accaattcaccatccaggctttgcacatcttcagtccaaggtaaggaggcttcctttgac
tcaacaaggttttctttcccatctgttacttctgaggactgtgagactctctataaagat
ccattcaagccattcgcatgctcatcaggagctctacaaacctttgagaatgattactca
gaaatggaggagatgaaaatgaaaattggcaaatgttcacatggtgatttattcaagata
gtcaatgcttctcaggcacccattggagaggatatatccgcatctgttgcaggcttacaa
gcaagcaaagcatcgcagtttagtttgttattggaaaatcttgatattttagaggagatg
tttgctgattctaacatggtaaggttggaaagggatattatggtgcaattaggaaggctt
ggagctctaaaactattccaaatatgtctatccaggaccctcaaaacatctacatctttt
gatttgtttagcgctcctactgagcatattagggagtgtcaaacgaatggcacagtggat
gatcacttagataaagttgttgttcgctctgggaaaaaggaagaaagaaaatcaaagaga
gaaagagcattggaaaaagctgacaacatatatgcttttccattgccctcaaaaactatt
cgtaaaggtcctggccgacctagtgtttctactgtaaagagaacattgaactctagaagt
aaaagattgatgaatgctaagaacgaggcagaaatgtcaaagggagtgaagttggttgcc
aacttggagagaatcagagcaactttagaagaagaaattgggcatgtggccagcttgagt
aactgggcagaagctgctggagtcgacaagaaggtgttgcaacaacaattgcagtttggt
tggtattgcagagatgaacttttaaggagtacacactccttagtcgtatacatcgcaaga
aactacagaggaatgggagtagcctttgaagatatacttcaggcagggaatttaggtgtc
ctgcaaggtgcagaacggtttgaccacacaaagggatacagattctcgacctatgtccag
tactggataagaaaatcaatgtcaactttggtggcacggcatgctagaggggtcaaaatt
ccttttacattaaacagggcaataggtcagatacagaaagctcgaaaggccctttacaaa
agccatggaagatatccagatgataatgaaattgcaaagttcactggtctatctcttgct
aaaattagatcagctggaaattgcctaagggttgtgggttcaactgatcaaagtttccaa
gattgttggggtgcaacaattctggagtttacaccagatacatcaataaagagccctgaa
gaaggtttcatgcggcaatgcaagagaaaagacattcacaatcttctgaaaggtttagac
ccaagagagaggcaaattttggtgttaagatatggttttggggagcagcagcgcaagtca
ctagaagagattgggagacttttcaatgttagcaaagagtggataaggaagttagagaaa
acagcactggcaaagctaagggatgaagaaatctgccaaaatttgagacattatgtggat
gtgtag
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