Vitis riparia (riverbank grape): 117912923
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Entry
117912923 CDS
T07274
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117912923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117912923
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117912923
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
117912923
NCBI-ProteinID:
XP_034683619
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All DBs
Position
4:2970981..2982864
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AA seq
245 aa
AA seq
DB search
MSMEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE
KACIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPC
AINAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISI
IPEGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQSQAPND
SSRAG
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgagtatggaaataggtagagatgatggccgcacagcaaaccagctgagaccactagct
tgttctcgcaacatcctcaatcgtgctcatggctctgcaagttggtctcaaggagatacc
aaagttcttgcagctgtttatggcccaaaagcaggaacaaaaaagaatgaaaaccctgag
aaggcttgtattgaagttgtttggaaacccaagacagggcagattgggaaaccagaaaag
gagtatgaggtgatactgaagaggactttgaaaagcatctgccttttgaatatcaatcca
aataccactacctcaattataattcaggttgtcagtgatgatggtgctcttctgccatgt
gccataaatgcggcatgtgcagcccttgtagatgctgcaattcctctcaagcatcttgct
gttgcaatatgttgctgtctgacagaaagcggatatgttatactagacccaaccaaggta
gaagagcagaaaatgaaggcatttgcatacttagtcttccccaattcagcgatctcaatc
attccagaaggatcgtcacacatggaaggggagctgatggaacatgggatcatcacatct
gttacacatggagtaatgtcagtggatgattatcttcactgtcttgaacgaggacaggct
gcaagcacaaagatgtcagcttttctaaggagaagcttgcaatcacaagccccaaatgac
tcatctagggctggatga
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