Vitis riparia (riverbank grape): 117913166
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Entry
117913166 CDS
T07274
Name
(RefSeq) probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1
KO
K15264
25S rRNA (cytosine2278-C5)-methyltransferase [EC:
2.1.1.311
]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vri03009
]
117913166
Enzymes [BR:
vri01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.311 25S rRNA (cytosine2278-C5)-methyltransferase
117913166
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Other ribosome biogenesis factors
117913166
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Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
NSUN5_N
NSUN5_fdxn-like
Methyltransf_25
Ubie_methyltran
FtsJ
PCMT
Methyltransf_31
Methyltransf_4
ASPP2-like_RA
RsmF-B_ferredox
Motif
Other DBs
NCBI-GeneID:
117913166
NCBI-ProteinID:
XP_034684002
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Position
4:1383356..1389456
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AA seq
508 aa
AA seq
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MVSSKTAATTASRARKPKEQRLSKADRSSYFARREAAKVLQCVLQGDAKRRAVGSIKSLV
YSPSVRNKKATFALVCQTLKHLSIIKDVLDSARILNAKWKRQEGLMYIITYDILFGQEIS
SVGDAEKFLLLQKDAIQLALARLLVRKKVKRVEDLMALYQIPDVSKPCFVRVNTLKLDVE
SAFHVLGKQNMVQKDDMVPDLLILPPGSDLHDHPLVRNGSVFMQGKASSMVAVALGPEPG
WEVLDACSAPGNKTVHLAALMKGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGDFL
NLNPMDPSYSKVRAILLDPSCSGSGTTAERLDHLLPSYAAGDASDVAGTERLNKLAAFQK
KALEHALSFPAVEKVVYSTCSIHQIENEDVIKSVLPLAASHGFQLATPFPHWPRRGLPVF
EGSEHLLRTDPVEDKEGFFIALFVRKSIARSMEQPIKTRKNNKVKSAKGNATMNYNKSVM
PFPFTRLSKLLLNSHLRLQTYKKLNMST
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcttcgaaaacggcggcgacgacagcctcacgcgccaggaagccgaaggagcag
cggctaagcaaagccgaccggtcttcatacttcgctagaagggaagccgcgaaggtcctg
cagtgcgttctccaaggagacgctaagcggcgagccgtcggctccatcaaatcgctggtc
tatagcccctcggtgaggaacaagaaggccaccttcgcgctcgtctgtcaaactctgaag
catctttcaattatcaaggatgttttggactctgctaggattctaaatgccaagtggaag
aggcaagagggattgatgtatataatcacttacgatattctgtttggccaggaaatttca
tcagttggtgatgcagagaaatttctactgcttcagaaagatgctatacagttagctcta
gcacggcttttggtgcgaaagaaggtgaaacgtgttgaagacttgatggctctttatcaa
attcctgatgtttcgaaaccttgttttgttcgtgtaaatactctgaagttggatgttgag
tctgccttccacgtgttagggaaacagaacatggttcagaaagatgacatggttcctgac
ttgttaatactcccaccaggtagtgatttgcatgatcatcctctggtcagaaatgggagt
gttttcatgcaagggaaagcaagttcaatggtggcggtagcacttgggccagaacctgga
tgggaggttctcgatgcatgttcagctccaggaaacaagactgtgcaccttgctgcactt
atgaaaggaaagggaaagattatagcatgtgaactggataatgaaagggttaaacgttta
gaggacactgtccgactctctggggctgctaacatagaagttttgcacggggacttttta
aacctaaatccgatggatccatcatactcaaaggttcgtgctattctgttagatccttcc
tgctctggatctggaaccactgccgagagattagatcatctgctcccatcatatgctgca
ggtgatgcctcagatgttgctggcacagaaaggctaaacaagcttgctgcttttcaaaag
aaggctttggaacatgcattatcttttccagcagtcgagaaagttgtctacagcacatgc
tccatccatcaaattgaaaatgaagacgtaatcaaatctgtcctaccccttgctgcatca
catggttttcaactcgcaacaccattccctcactggcctcggcgtggcctccctgttttt
gaaggctctgaacatctgcttcgaaccgatccagttgaggacaaagagggcttcttcatt
gctctgtttgtcagaaagagcattgccagaagcatggaacagccaatcaaaacccgtaag
aacaacaaggtgaaatctgctaaaggaaatgcaactatgaactataataaatctgtgatg
ccttttcctttcactagactgtccaaattgttgctaaattctcatctgagattacagact
tacaagaaactaaatatgtctacttga
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