Vitis riparia (riverbank grape): 117913956
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Entry
117913956 CDS
T07274
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117913956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117913956
03009 Ribosome biogenesis [BR:
vri03009
]
117913956
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117913956
Spliceosome [BR:
vri03041
]
Complex A
U1 snRNP components
U1 related factors
117913956
Complex B
117913956
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Pre-60S particles
Helicases
117913956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
117913956
NCBI-ProteinID:
XP_034684981
LinkDB
All DBs
Position
5:complement(1881016..1889292)
Genome browser
AA seq
1165 aa
AA seq
DB search
MATAEPAPSSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALPPPLP
PGPPPAAATPKLAPIPAARTMQTNGSLAHHGQQMNQAQQQQGQQMMQTSQQQGQQMSQFP
QQHGQLMSQQQGPQMAQSVQQPGPQFGQALQQQGQLTPQQLGQQIVQHPGQQMLSQSLQQ
MPQQPSQQLPQQLGPQTPQLLGQQTPQHAGSQMAQPQVHQYAHQQMQYNVYQQHVPPPGQ
QNSQQQTQHIAQGPPFQKQQEFKTGFPQREEIDFHQGSQVGFSPSQIQQTGTSSAQNMPA
GVKSFQMPQSGGQTGQAQPFSGPSVSMQQQHDPRFQNQMGPGMMHSQQPNIPPAGLKRGY
DENPRGTAGNDYYFSANKEVPLSVSQQPKLAAIPSARNPQAIADDVVALPYQEMRMGGVP
VPNVPPGHAGGLNAVAGQAMHNMYSHATGGTGFSNNALMRPPSMMIGSSDISTLSPVEVY
CQQHEVTATGENVPPPLMTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVA
IAKTGSGKTLGYLIPAFMLLRRRRNNVQNGPTVMVLAPTRELATQIQDETIKFGRSSRVS
CACLYGGTSKNAQLKELDRGADVVVATPGRLNDILESKKIDLGQISLLVLDEADRMLDMG
FEPQIRKIVNEIPPHRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQY
VEVVSPAEKQRRLEQILRSQERGSKVIIFCSTKKLCDQLARSIGRNFGAAVIHGDKSQVE
RDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATG
VSYTFFSEQDCKYAADLIKVLEGANQRVPPEVRDMALRSGPGFGKDRGGVNRFDSGGGGG
RWDSGGRGSGMRDGGFGGRGSGMRDGGFGGRGGMRDGGFGGRGGMRDGAIGGHSGRNDFF
SGRGNRGRGFGGPGGGNVGWGRNERGLHDRYSNMDGRGRGRGRGRFDNRRDVADRSRGRS
YSSSPEKVRTWGYSRSSSRSRSRSRSRSRSWSRSRSRSPRRSHSRSRSPRGSRSPGRSRS
RSRSQGYDRYERSHDRHFDQKDLTQPEAQVPPESTMSPMSPGTQAFPPQEFPGGDLDAHP
PVVETTEQGHPLTGDESFHHPAPEP
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgcggagccagctcctagttcccttggtcctcggtatgctcccgatgacccc
actcttccaaaaccttggaagggtttgattgatggaagcacaggccttttatactactgg
aatcctgaaaccaacatcacccagtatgagaaaccaactgctttgcctccaccattgccc
ccagggccacctcctgctgctgcaactcctaagctggctccaattccagcggcccgaaca
atgcaaacaaatggtagtctagctcaccatgggcagcaaatgaatcaagcccaacagcag
caggggcagcaaatgatgcaaacctctcagcagcaggggcaacaaatgagccagtttcct
cagcagcatggacaactaatgtctcagcagcagggtccacaaatggctcaatctgtgcaa
caaccaggtccacaatttggacaagctttgcaacagcaggggcaactaacaccacagcaa
cttgggcagcaaatagtgcagcatccagggcagcaaatgctatcacaatcactgcagcaa
atgccccaacagccaagtcagcaattgcctcagcagcttgggccacaaacaccacagctg
cttgggcagcaaacaccacaacatgcaggctcacaaatggcacaaccacaggtgcatcaa
tatgctcatcagcagatgcaatataatgtatatcagcaacatgtgcctccaccagggcaa
caaaattctcagcagcaaactcagcatattgcacagggtccaccatttcaaaagcaacaa
gaattcaagaccggattcccacagagggaagaaattgattttcaccaaggaagccaagtt
ggattttctccatcacaaattcaacagactggcacctcgtctgctcaaaacatgccagct
ggagtcaagtcctttcagatgccccaatcaggtggtcagacgggtcaggctcagccgttc
agtggtccttcagtcagtatgcagcagcaacatgatcccaggtttcaaaatcagatgggt
ccaggaatgatgcacagtcagcagcctaacattcctccggctggattaaagaggggatat
gatgaaaatccacgtggaacagccggtaatgattattatttcagtgctaacaaggaagtg
ccactttcagtttcgcagcagcccaagcttgcggcaataccctcagcaagaaatcctcag
gctattgctgatgatgttgttgctcttccctaccaggagatgaggatgggtggtgtccca
gttccgaatgttccccctggtcatgctggcggattgaatgctgtagcaggtcaggccatg
cataacatgtacagccatgcaactggtggtacaggattttcaaataatgctctgatgaga
cctccttcaatgatgattggatcttcagatattagcactctctcgccagttgaagtttac
tgtcaacagcatgaagttacagcaacgggtgaaaatgtgcctcctcctttaatgaccttt
gaagcaactggtttccctccagagatattgagagagatatattcggctggtttctcttct
cctacaccaattcaggcacagacatggccaattgcactacagggtagggacattgtggca
attgccaaaacaggttctgggaaaacattgggctatctgatccctgccttcatgcttctt
agaaggcgccgtaataatgtacagaatggcccaactgtgatggttttggctccaacccga
gagcttgccacacaaatacaagacgagaccatcaagtttggccgatcttctagggtctct
tgcgcgtgcttgtatggtggaacttcaaagaacgctcagctaaaagaactagatcgagga
gcagatgttgttgtggcaactcctggtcggctcaatgatatccttgaatcgaaaaagatt
gaccttgggcaaatttcactccttgtgcttgatgaagcagatcgaatgttggatatgggt
tttgaacctcaaatccgtaagattgttaatgagatacctccacacaggcaaactcttatg
tatactgcaacctggcccaaagaagtgagaaaaatagcaggtgatcttcttgttaatcct
gttcaagtgaacattggcagtgttgatgaacttgctgcgaacaaggctatcacacagtat
gttgaagtagtttcaccagcagaaaagcagaggcgcttggaacagatacttagatcccaa
gaacggggttctaaggtcatcatcttctgttccacaaagaagttgtgtgaccagcttgca
cgtagcattggacgtaactttggggctgctgtaattcatggagacaagtctcaggtggag
agagactgggttttgaatcagttccgcagtggaaagtccccaatcttagttgccactgat
gttgctgcccggggacttgacataaaagacataagggtcgtaatcaactatgatttccca
actggaattgaagattacgtccaccgaattggacgaaccgggagggctggtgcaacagga
gtatcatacacatttttctctgaacaggactgcaaatatgctgctgatctgattaaagtt
ctggagggggctaaccagcgtgtgcctcccgaagtgcgagatatggctttgcgcagtggg
cctggttttggcaaagatcgcggtggggtgaaccgttttgattctggtggtggtggtggg
cgttgggattctggtggccgtggcagtggcatgagggatggaggctttggtggccgtggc
agtggcatgagggatggaggctttgggggccgtggaggcatgagggatggaggctttgga
ggccgtggtgggatgagggacggtgctattggtggacacagtggaagaaatgatttcttt
tctggccgtggaaacagggggcgtggatttggtggtcctggtggtggtaatgttggatgg
ggccggaatgaacgtggcttacatgaccgctatagcaatatggatggacgtggacgtggc
cgcggccgggggcggtttgataatagaagagatgttgcagataggagtagaggccgaagt
tacagttctagccctgaaaaggttcgtacatggggttatagcagaagcagtagccgtagc
cgaagtcgaagcaggagcaggagccgaagctggtcccgcagccgtagccgcagtcctagg
cggagtcacagccgtagccgcagtcccagaggcagccgcagccctggacgtagccgcagt
cgcagtcgaagccaaggttatgacagatatgagaggtcacatgaccgacattttgatcag
aaggaccttacacagcctgaagcccaggttcctcctgaatcaacgatgtctcccatgtca
ccaggcactcaggcatttccaccacaggaatttccaggaggtgaccttgacgcacatccc
ccagtagtagaaactactgagcaagggcatccactaactggagatgaatctttccatcat
ccagcacccgaaccctaa
DBGET
integrated database retrieval system
