Vitis riparia (riverbank grape): 117914270
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Entry
117914270 CDS
T07274
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri00040
Pentose and glucuronate interconversions
vri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117914270
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117914270
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Peptidase_C24
Motif
Other DBs
NCBI-GeneID:
117914270
NCBI-ProteinID:
XP_034685414
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Position
5:complement(11626377..11631065)
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AA seq
432 aa
AA seq
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MPMAGSKGWTSLCSLLLFFLFVAVMANDRNGGTEQLQSSNNSSMAARNEHAVDDPDAVAS
MVDMSIRNSTERRKLGYFSCGTGNPIDDCWRCDHNWQKNRKRLADCGIGFGRNAIGGRDG
RFYVVTDPGDDDPVNPKPGTLRHAVIQDAPLWIVFKRDMVITLKQELIMNSFKTIDGRGV
NVHIANGACITVQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSS
HVWVDHNSLSSCADGLVDAVMGSTAITISNNHFAHHNEVMLLGHSDSYERDKQMQVTIAY
NHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPVNPFAKEV
TKRVDTPSGQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSITSN
AGALSCRRGSQC
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgccaatggcgggttccaaggggtggacttccctctgctcactcctgctttttttcctg
ttcgtcgcagtgatggccaatgaccgaaatggaggaacagagcagttgcagagctcaaac
aactcatcaatggctgccaggaatgagcatgcagttgatgacccagatgcagtggcttca
atggtggacatgagcattcggaacagcacagagagaaggaaattgggttatttctcgtgt
ggaactggtaatcccattgatgactgctggcgatgtgaccacaattggcaaaagaaccgt
aagcgccttgcagactgcggcattggctttgggcgaaatgcaattgggggccgtgatgga
cgcttctacgtggtcactgaccctggtgatgatgatcctgtcaaccccaagcctggcact
ctgcgccatgctgtcatccaggatgctcctctctggattgtgttcaagcgagacatggtg
atcacactgaagcaggagctcatcatgaacagcttcaaaacaatagatgggcgtggggtc
aatgtccacattgctaatggagcatgcatcaccgtccaatttgtcacgaatgttataatt
catggtcttcacatccatgactgcaagcccactgggaatgccatggtgaggagctcacca
agtcactttgggtggaggacaatggccgatggcgatgccatttcgatttttggttcaagc
catgtatgggtcgatcacaattcactctctagctgtgctgatggcctcgttgatgctgtc
atgggctcgactgccattaccatttccaacaaccactttgcccaccacaatgaggtgatg
ctgttgggccacagtgattcttatgaaagagacaagcaaatgcaagtgacaattgcctat
aaccattttggagagggtctgatccagaggatgccaaggtgcagacatggatatttccat
gtggtgaacaatgactacactcactgggaaatgtatgctattggtggaagtgcaagcccc
accatcaacagccagggcaacagatatcttgcaccagtcaatccttttgcaaaagaggtg
acaaaaagggtagacacgccttcaggccagtggaagggttggaattggaggtcagaagga
gacctgctgttgaatggagcctacttcaccccatctggtgccggtgcctcagccagctat
gctagagcttcaagcttgggagccaagtcctcttccatggttggctccattacttccaat
gctggtgctctctcctgccgcaggggttcccagtgctag
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