KEGG   Vitis riparia (riverbank grape): 117915389
Entry
117915389         CDS       T07274                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03018  RNA degradation
vri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117915389
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117915389
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vri03019]
    117915389
   03041 Spliceosome [BR:vri03041]
    117915389
Messenger RNA biogenesis [BR:vri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     117915389
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     117915389
Spliceosome [BR:vri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    117915389
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 117915389
NCBI-ProteinID: XP_034686856
LinkDB
Position
5:12824077..12837083
AA seq 87 aa
MSTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq 264 nt   +upstreamnt  +downstreamnt
atgtcgacgaatccctctcaactccttccatcagagctgattgatcggtgcatagggtcg
aaaatatgggtgataatgaaaggggacaaagagcttgttggaaccctaaggggattcgat
gtctacgtgaatatggttctggaagacgtgactgaatacgaaatcacctctgaaggtcgg
agaatcacgaaattggatcagatcttgctgaacgggaacaatattgccattctggttcct
ggtgggtctcctgatccagaatga

DBGET integrated database retrieval system