KEGG   Vitis riparia (riverbank grape): 117915403
Entry
117915403         CDS       T07274                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117915403
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vri03041]
    117915403
Spliceosome [BR:vri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    117915403
 Complex C
   U5 SnRNP specific factors
    117915403
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_SPT8 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_HPS5 eIF2A Beta-prop_WDR75_2nd Beta-prop_Nup120_160 Nbas_N PEP5_VPS11_N
Other DBs
NCBI-GeneID: 117915403
NCBI-ProteinID: XP_034686874
LinkDB
Position
5:complement(23699846..23703354)
AA seq 344 aa
MQGFPSENALSVVGPRPGMELSAVPYTGPRALGANGKQRTSSLESPIMLLAGHQSAIYTM
KFNPTGTVIASGSHEREIFLWYVHGDCKNFMVLKGHKNAILDLQWTTDGTQIISASPDKT
LRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD
KYQITAVSFSDASDKIFTGGIDNDVKVWDLRRNEVTMTLQGHQDMITGMQLSPDGSYLLT
NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIW
DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI
NT seq 1035 nt   +upstreamnt  +downstreamnt
atgcaaggtttcccaagtgaaaatgctttgtctgttgttggtcctaggccaggaatggaa
ttgtctgctgttccatatactgggcctcgagcactgggtgcaaatggaaaacagcggaca
tcgagtttagaatcaccaatcatgttgttggcaggccatcaaagtgctatatacacaatg
aaattcaatccgacgggtacagtcattgcatctgggtctcatgaaagagaaattttccta
tggtatgttcatggtgattgcaaaaatttcatggttttgaaagggcacaagaatgcaatt
ttggatcttcagtggactactgatggaacccagataatatcagccagccctgacaagact
ctcagggcatgggatgtagaaacagggaaacaaataaaaaagatggctgaacactcctct
tttgtgaattcatgttgtccttcccgtaggggtcctcctcttgttgtcagtggatctgat
gatggcactgccaaactttgggatatgcgtcaaaggggtgccatccagacatttcctgac
aaataccaaatcacagctgtcagtttctctgatgcatctgataagatcttcacaggtggg
atagacaatgatgttaaagtatgggatctgagaagaaatgaggttaccatgactcttcaa
ggccatcaggatatgataacaggtatgcagttgagtccggatggctcctatcttcttaca
aatggcatggactgcaaactttgcatatgggatatgcgcccatatgctccacaaaatcgt
tgtgtgaagatattggaagggcaccaacacaactttgaaaagaacttgttgaaatgtagt
tggtctccagatggaagcaaagtcacagctggtagttctgatcggatggtgtatatttgg
gatacaacttctcgacgcatcttgtataagcttcctggtcacactggatctgtcaacgaa
tgtgtcttccatcccagcgaacctattgttggatcttgcagtagcgataaacagatttat
cttggggagatctaa

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