Vitis riparia (riverbank grape): 117915436
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Entry
117915436 CDS
T07274
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri00040
Pentose and glucuronate interconversions
vri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117915436
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117915436
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
117915436
NCBI-ProteinID:
XP_034686954
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Position
1:6791823..6793778
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AA seq
403 aa
AA seq
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MAIPLSVLLFLLPLLSPTFISSSPVQDPELVVEEVHKRINASRRNLGFLSCGTGNPIDDC
WRCDPDWEKNRQGLADCSIGFGRHAIGGRDGEIYVVTDSGDDDPVNPKPGTLRYAVIQKE
PLWIIFQRDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCK
QGGNANVRDSPDHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLVDAIHGSTAITIS
NNYMTHHNKVMLLGHSDSYTQDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHW
EMYAIGGSAEPTINSQGNRFLAPDDRFSKEVTKHEDAPQSQWKNWNWRSEGDLLLNGAFF
TASGAGASSSYAKASSLGARPSSLITTITNGAGALNCKKGKRC
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcaattcctctctctgttcttctcttcctcctgcctcttctgtctccaaccttcatt
tcctcttcgccggttcaagatcctgagctagtagtagaagaagtgcacaagaggatcaat
gcttcaaggaggaacttggggttcctgtcttgcggaaccggcaaccccatcgacgactgc
tggcggtgcgacccagattgggaaaagaaccgccagggtttggctgactgctcaatcggg
tttgggaggcatgccataggcggaagagatggggagatttacgtggtgacagactcgggg
gacgatgaccctgtgaaccctaagcctggcactctgagatatgcagtgatccaaaaggag
ccattgtggatcattttccagagggatatggtgatcaaactgaaggaagagctgatcatg
aactcgttcaagaccatcgacggcagaggcgccagcgtccacattgcgggagggccgtgc
attactatccagtacgtgaccaacattatcattcatggcctcaacatacacgactgcaag
caaggaggcaacgccaatgtgagagactcccccgaccattacgggtggaggacgatatca
gacggggatggggtgtccatattcgggggaagccatgtttgggtggaccactgctctctc
tccaactgcaatgacggactggtggatgccatccatggatccacggccatcaccatctcc
aacaactacatgacccatcataacaaggtcatgctattgggccacagtgattcctatact
caagacaagaacatgcagattaccattgccttcaaccattttggagaaggtctcgtccag
agaatgcccagatgtcgacacggctattttcatgtggtgaataacgactactcgcactgg
gaaatgtacgctattgggggaagcgcggagcctacaattaacagccaaggcaatagattt
cttgctcctgatgacagattcagcaaggaggtaaccaaacatgaggatgcaccacagagc
caatggaagaattggaattggagatcagaaggagatttattgttaaatggtgccttcttc
acagcatcaggggccggagcttcttctagttacgccaaggcttcgagtttgggggcaaga
ccctcttctcttatcaccactatcacaaatggggctggtgcactcaactgcaagaaaggc
aagcgttgctga
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