Vitis riparia (riverbank grape): 117915776
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Entry
117915776 CDS
T07274
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vri04131
]
117915776
04121 Ubiquitin system [BR:
vri04121
]
117915776
Enzymes [BR:
vri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117915776
Membrane trafficking [BR:
vri04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
117915776
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117915776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING-like
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
117915776
NCBI-ProteinID:
XP_034687346
LinkDB
All DBs
Position
6:16905539..16907328
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AA seq
388 aa
AA seq
DB search
MEMASTTSYWCHRCTRFVRVWAQDSIVCPYCESGFLEEIEATPRSENHHRRFPATAMYML
GNNRPDSEQSANLGLRRSRRNAGDRSPFNPVIVLRGPADGGGGEGGVVERSSFELYYDDG
AGSGLRPLPATMSEFLMGSGFDRLLEQLSQIEINGFGRGEHPPASKAAVESMPTIEIVSS
HIVTELHCAVCKEAFQLGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPTDVPGTR
NSPVSGNEALSPAPNEEETVGLTIWRLPGGGFAVGRFSGGRRAGERELPVVYTEMDGGFN
NSGAPRRISWASRRSRSRESGGSLGRAFRNIFSFLGRFRSSSSSSSRSTSEPGSITRSHS
HSSSVFSRYVRRRSRAWVLEDQSGNSRW
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggagatggcttcgacgacgtcctattggtgtcacagatgcactcgtttcgttagagtt
tgggctcaagatagcatcgtgtgtccgtactgcgagagtggcttcttggaggagattgag
gccacgccgagatcggagaatcaccaccgtcggtttccggcgactgcgatgtacatgctg
gggaacaaccggccggattcggagcaaagtgcgaatctagggttgcggcggagcaggagg
aacgccggtgatcggtctccgtttaatccagttattgtgctgcgcggtccggctgatgga
ggtggtggtgaaggcggtgttgtggagaggagtagttttgaattgtactacgatgacggg
gcagggtccgggcttcggccgttgccggcgaccatgtcggagttcttgatggggtcaggg
tttgatcggttgctggaacagctttcgcagattgaaatcaatggttttgggcgcggcgag
caccctccggcgtcaaaggcggccgtggagtcgatgccgacgatcgagatcgtgtctagc
cacatcgtcacagagttgcactgtgcggtatgcaaagaggcgttccagctgggttcggag
gctcgcgaaatgccctgtaagcatatctatcattccgattgtattctcccatggctatct
ctccgcaattcatgccctgtttgccgccacgagttgccgacggacgttcccggaacaagg
aactcgccggtatctggaaatgaagcactttctccggcaccaaatgaagaagagacagtg
gggctgaccatatggaggcttcctggcggtgggtttgccgtggggaggttttccggagga
agaagagccggcgagcgtgagcttcctgtggtgtacacagaaatggatggtgggttcaat
aatagtggtgctccaaggaggatttcatgggcatccagaagaagccgatccagagagagc
ggcggatcactgggcagagcttttcgcaacattttctcatttttagggaggtttaggtct
tcttcctcatcatcttctcgttcaacttcagaacctgggtccattaccagaagtcacagt
cactcaagttcggttttcagtagatacgttcggaggaggagcagagcttgggtactggaa
gatcaaagtggaaattcaagatggtga
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