Vitis riparia (riverbank grape): 117915912
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Entry
117915912 CDS
T07274
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03030
DNA replication
vri03410
Base excision repair
vri03420
Nucleotide excision repair
vri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117915912
03410 Base excision repair
117915912
03420 Nucleotide excision repair
117915912
03430 Mismatch repair
117915912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vri03032
]
117915912
03400 DNA repair and recombination proteins [BR:
vri03400
]
117915912
DNA replication proteins [BR:
vri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117915912
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117915912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
PTCB-BRCT
RCF1-5-like_lid
AAA_22
AAA_30
Rad17
AAA_19
nSTAND3
AAA_assoc_2
AAA_24
BRCT_2
AAA_18
AAA_5
RuvB_N
AAA_16
Zeta_toxin
AAA_14
AAA_17
Gp44_lid
AAA_28
SurA_N
TsaE
RsgA_GTPase
NTPase_1
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
117915912
NCBI-ProteinID:
XP_034687543
LinkDB
All DBs
Position
6:complement(6233724..6267358)
Genome browser
AA seq
941 aa
AA seq
DB search
MAASKSDIRKWFMKKHDKDNGNPSKPAKPEPKASQSGKPSPATVQQEKPVHGGQESSCRR
KTSKYFQKPKDEKEMEELPAKRKTQKGTEESLNPPPSKKIRRVVDDDDDDFVLHKSDDEK
VDKDTEPPIKSGGRGRGGRGALVTPTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAS
DCLAGLTFVISGTLDSLEREEAENLIKRHGGRVTGSVSKKTNFLLCDEDIGGKKSAKAKE
LGTGFLTEDGLFDMIRASNHAKAPARGEPKKSLDKVVLATPKKSPQKVEKKVDQVVNSSG
KRTVLVATTPKHIDQTIGHASLTWTEKYKPKVPNDIIGNQSLVKQLHEWLAHWNEQFLHT
GTKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDNRGKADAKID
KGIGGSNANSIKELVSNEALGANMDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKIS
KIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLLQVANAEGLQVNEIALEELA
ERVNGDMRMALNQLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFVAVDKLFGFNGGKLR
MDERIELSMSDPDLVPLLIQENYINYRPTLAGKDDNGVKRMSLLARAAESIGDGDIINVQ
IRRYRQWQLSQAGSFASCITPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNKRLLE
DLHVHLLASRESNSGRGTLRIDYLTLILKRLTDPLRMLPKDDAVQKVVEFMDLYSISQED
FDTIVELSKFQGHPSPLEGIQPAVKSALTKAYNKGSSSRLVRAADLITLPGIKKAPKKRI
AAILEPVDDELARENGDALAESEEENTSDTDDMDTANGDKKLPVNLQNLNSKGIKVELDL
KGAGSSSAKKTPASRGRGGGSASTEKKGGRGSGAAGAKRKR
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgtccaagtcggatatcaggaagtggtttatgaaaaaacatgacaaggacaat
ggcaatccgtcgaagcctgcaaaacctgagcctaaagcttcacaatcagggaaaccttct
ccagctactgtgcagcaggagaaacctgtgcatggaggccaagaaagttcttgcagaagg
aagactagcaagtattttcaaaagcctaaagatgagaaggaaatggaagaactcccagct
aaaagaaagacccagaagggtactgaggaatcattgaaccccccaccttccaaaaaaatt
cgcagagttgtcgatgatgatgatgacgactttgtcttgcataaaagtgatgacgagaaa
gttgataaagatacagaacctcctattaaatctggtggaaggggtcgtggtggaagaggt
gcattggtaacaccaactggtggaagaggcagaggtggtggacgtggtggatttatgaat
tttggagaaaggaaggatcctccacacaaaggagaaaaggaagtccctgaaggtgcttct
gattgtttggctggtttgacatttgtaattagtggaacccttgacagtttggaaagggaa
gaagcagagaatctgatcaagcgccatggtggtcgtgttactggatcagttagcaaaaaa
acaaattttcttttatgtgatgaagatattgggggcaagaagtctgctaaggccaaagag
ctgggcactggctttcttaccgaggatggactgtttgatatgatccgtgcatcaaatcat
gcaaaagcacctgcacgaggggaaccaaaaaagtctttggataaggttgtgttggcaaca
ccaaagaaaagtcctcagaaagtggaaaagaaagtggatcaagtggtcaactcttcagga
aaacgcacggttttggtagctaccactcctaagcatatagatcaaactattggacatgct
tcgttgacatggactgaaaaatataagccaaaggttccaaatgatatcattgggaatcag
tcactggttaaacagcttcatgaatggttggcacattggaatgagcaatttcttcatact
ggcactaagggaaaagggaaaaagcagaatgattctggtgctaaaaaagctgtactgtta
agtggaacacctggtataggaaagactacatcagcaaagttggttagtcagatgctgggt
ttccaggcaattgaggtaaatgccagtgataatcgtggaaaggctgatgccaaaattgat
aaaggaattggtggaagcaatgcaaattctataaaggaactcgtcagtaatgaagctttg
ggtgctaacatggataggtcaaagcatccaaagactgtgctgattatggatgaggttgat
gggatgtctgctggagatagagggggagtggctgatcttattgctagcatcaagatttcc
aaaattcccatcatctgcatttgtaatgatcgctacagtcagaaactaaaaagtctagtg
aactactgtttgcttcttagcttccgaaaacctacaaaacaacagatggcaaagaggtta
ttgcaagttgcaaatgcagaaggccttcaagtcaatgagattgcccttgaggaacttgca
gaaagagttaatggagatatgcgcatggcactaaaccagttgcagtacatgagcctctcc
atgtcagtcattaaatatgatgatgtaaggcagcggcttctgagcagtgcaaaagatgaa
gatatttcaccatttgtggctgttgataagctgtttggttttaatgggggaaagctgaga
atggatgagcggattgagctcagcatgagtgaccctgatctagttccacttcttattcag
gaaaactatatcaattataggccaactttggctggtaaggatgacaatggggtgaaacgg
atgagcttgcttgctcgtgctgctgagtctattggtgatggggatataattaatgtacag
attcgaagatatcgacagtggcaactctctcaagctggctcctttgcatcctgtataact
cccgctgcactcttgcatgggcaaagggagacacttgaacagggagaacgcaattttaat
agatttggtggctggctgggaaaaaactcaacaatgggaaaaaataagagactcttggag
gatctgcatgttcatcttcttgcttctcgtgaatctaattctggaaggggaaccttgcga
attgattaccttactctaattctgaaacggttgactgatccactacgcatgctgcctaag
gatgatgctgttcagaaagttgtggagttcatggatttatactctataagtcaggaggac
tttgatactattgtggagttatctaaatttcaggggcacccaagtccgctggagggcata
cagccagctgtcaagtcagctttaacaaaggcttacaataaaggaagtagctctcgcttg
gtgcgtgcagctgatttaatcacacttcctggaatcaaaaaggcccccaagaagcgaatt
gctgcaattctagagccagtagatgatgaattggcaagagagaatggtgatgcattggcg
gaaagtgaagaagaaaacacttcagacacagatgacatggacactgctaatggtgataag
aagctgccagtgaatctccagaatctcaactctaaaggaattaaagtagaactagactta
aaaggtgctgggagttctagtgccaagaaaacaccagcaagcagaggaagaggaggaggt
tctgcatccacagagaagaaagggggcagaggctcaggggctgctggtgccaagagaaag
aggtag
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