Vitis riparia (riverbank grape): 117916056
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Entry
117916056 CDS
T07274
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
vri03015
mRNA surveillance pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117916056
09122 Translation
03013 Nucleocytoplasmic transport
117916056
03015 mRNA surveillance pathway
117916056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117916056
03041 Spliceosome [BR:
vri03041
]
117916056
03009 Ribosome biogenesis [BR:
vri03009
]
117916056
03012 Translation factors [BR:
vri03012
]
117916056
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117916056
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117916056
mRNA cycle factors
Stress granule specific factors
117916056
Spliceosome [BR:
vri03041
]
Complex C
Other components
EJC/TREX
117916056
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
90S particles
Helicases
117916056
Translation factors [BR:
vri03012
]
Eukaryotic type
Initiation factors
eIF-4
117916056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
117916056
NCBI-ProteinID:
XP_034687754
LinkDB
All DBs
Position
6:1248698..1254758
Genome browser
AA seq
412 aa
AA seq
DB search
MAAAATASVVPANRGGRRNGAVDDEKLVFETTEGVEPIMSFDQMGIKDDLLRGIYAYGFE
KPSAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQMVDTSNREVQALILSPTRELA
SQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHIVSGTPGRVCDMIKRRTLRTR
AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITNKFMTDPVRI
LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRS
NNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRE
LYIHRIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagccgcaacagcgtcggtcgtgccggcgaacagaggcggtcgtcggaacggc
gccgtcgacgatgagaagctggtgttcgagaccacggagggtgtggagcccatcatgagc
ttcgaccagatgggaatcaaggacgatctccttcggggcatctacgcctacggcttcgag
aagccctccgccattcagcagagagcggtcttgcccatcattcagggtcgcgacgtcatc
gctcaggcccagtccggtaccggcaaaacctccatgattgctctcaccgtttgccagatg
gtcgacacttccaaccgagaggtccaagcattgatcctatcacccacaagggaacttgca
tctcagacagagaaagtgattctggccattggggatttcataaatatacaagcccatgca
tgtattggaggcaaaagtgtaggtgaagatattagaaagctagaatatggcgttcacatt
gtgtctggaactcctggaagagtgtgcgacatgatcaagaggagaacattgcgaactaga
gctattaaactattagttcttgatgaatctgatgagatgttgagcagaggtttcaaggac
caaatttatgatgtttacagatatcttccaccagagcttcaggttgtcttgatttctgct
acccttccaaatgaaattttggagataacgaacaaatttatgacagatcctgtaaggatc
cttgtgaaacgtgatgagttgactctagagggtataaagcaattttttgttgcagtagaa
agagaagagtggaagtttgacactttatgtgatctttatgatactcttactatcactcaa
gctgttattttctgcaacacgaaacgaaaggtggattggctaactgagaagatgcgcagt
aataactttacggtctcatcaatgcatggagacatgcctcagaaggagagagatgctata
atggcagagttccgttctggtactacccgtgtgctgatcacaacagacgtctgggctcgt
gggcttgatgttcaacaggtttccctagtgattaattatgaccttccaaataatcgagag
ctttacattcatcgtattggtcgttctggtcggtttggacgcaagggtgttgcaatcaac
tttgtcaaaaccgatgatatcaagattctaagagacatagagcagtactacagtacccag
attgatgaaatgccaatgaatgtggccgatctgatttaa
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