Vitis riparia (riverbank grape): 117916109
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Entry
117916109 CDS
T07274
Name
(RefSeq) U-box domain-containing protein 13
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
117916109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vri04121
]
117916109
Enzymes [BR:
vri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117916109
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
U-box type E3
117916109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
MLKL_N
Neurochondrin
zf-RING_UBOX
HEAT_EZ
zf-C3HC4_4
Arm_2
zf-Nse
KAP
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
117916109
NCBI-ProteinID:
XP_034687853
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All DBs
Position
6:17498290..17504855
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AA seq
686 aa
AA seq
DB search
MEEAKGAPVQELIDTVSKISSISDYRCTVRKEYCNLARRLKLLIPMFEEIRDSKEPIPEE
SLKALVSLKEALESAKELLRFGSEGSKIFMVLEREQVVSKFHEVTANLEQALSGISFEKL
DITDEVKEQVELVLSQFRRAKGRADATDAELYEDLVSLYNKSTDAATDPAVLRRLAEKLQ
LMQIDDLTQESLALHEMVTASSADPGESIEKMSMLLKKIKDFVQTENPDLTATHGKSLPS
SCSGQISTDGNHKSPVIPDDFRCPISLELMNDPVIVSTGQTYERSCIEKWLEAGHGTCPK
TQQTLSSQALTPNYVLRSLIAQWCESNGIEPPKRPSSSRPSKTASSCSPAERTNIEILLN
KLRSGSPEDQRNAAGEIRLLAKRNADNRVAIAEAGAIPLLVNLLATPDSRTQEHAVTALL
NLSICEDNKSSIINSGAVPGIVYVLKKGSMEARENAAATLFSLSVVDENKVTIGASGAIP
PLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEHGGGMVDEALA
ILAILASHPEGKAAIGSSEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQHHLAEAQEL
GVMGPLVDLAQNGTDRGKRKAAQLLERMGRFIEQQQQQQALVQAQAQAQTQAQPQPQPQA
HTHTHTHTHTESPHTQLSTLMNAVDG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagcaaaaggagctccagtacaggagctgatcgatacagttagtaagatatcg
tcaatctcagattacagatgtacggtcaggaaagagtattgtaatctggcaagaaggttg
aagctgttgattccaatgtttgaagagattcgggacagtaaagagccgattccagaggag
tcgttgaaagccctagtctcgttgaaggaggctctggagtcagctaaagagttgctcaga
tttggtagtgaagggagcaagattttcatggtcctagaaagagagcaagttgtctccaaa
ttccacgaagtgactgctaatctggaacaagctttgagcggaatctcatttgaaaaactt
gacataacagacgaagttaaggaacaggttgagctagttctctctcagttcagaagagcc
aaaggaagggctgatgcaaccgatgctgagctgtatgaggatcttgtgtccctttataac
aagagcactgatgcagctacagacccagctgtcttaaggaggttggctgagaagttgcaa
ttaatgcaaatagatgatctcacacaagaatcactggctctgcatgaaatggtcactgcc
agcagtgcagatcctggagagagcatcgagaagatgtcaatgctattgaagaaaattaag
gattttgtgcagactgaaaatccggacttgactgctacacatggaaagtcccttccttca
agttgcagtgggcaaatatctaccgatgggaatcacaagtccccagttattccagatgat
tttcgttgtccgatatccctggagctaatgaacgatcctgtcattgtttcaacagggcag
acctatgaacgttcctgcatcgagaaatggctggaagcaggacatggcacatgtccaaag
acacaacagaccctctctagccaggccctcacaccaaactatgtcttgcgtagcctcata
gcacagtggtgcgagtctaatgggatcgagccaccaaaaagacccagcagttctcggccc
agtaaaactgcatcttcctgctcaccagctgagcgcaccaacatagaaattcttctcaac
aagcttcgatctggcagccctgaagaccagcgaaatgcagcaggtgagatccgccttctt
gctaagcgcaatgcagataatcgagtggccattgccgaagcgggggccatccctctcctg
gtcaacctccttgcaacacctgattcccgcacccaagagcatgctgtcacagcgcttctt
aacctttccatatgtgaagataacaaatcaagcattattaactctggagctgtacctggt
atagtttatgtgctcaagaaggggagcatggaagcacgggaaaatgctgcagctaccctc
tttagcctttcggtggtggatgagaataaggttacaattggtgcttcaggggcaatccca
ccactggtgacattgttaagtgaaggtacccagagggggaagaaggatgctgcaaccgca
ctgttcaacttgtgtatttaccaagggaacaagggaaaggcagtgagagctggagtagtg
cccacactgatgcggctgctgacagaacatggaggtggaatggtggatgaggcactggct
atacttgcaatcttagccagccatcctgaagggaaggcagccattggatcctccgaggca
gtgccagttttggtggaggttattggcaacgggtcccccaggaacagagaaaatgcagct
gcagttttggtgcatctttgtgctggtgaccaacatcatctagcggaagctcaggagctt
ggagtgatgggtccattggtggatctggctcaaaatggcaccgataggggcaagcgaaag
gctgcacagttgcttgagcgcatgggcaggtttattgaacagcagcagcaacagcaggct
ctggtgcaagctcaggctcaggctcagactcaggcccagccccagccccagccccaggca
catacccacacccacacccacacccacacagagagcccgcacacacagctgtcgacgcta
atgaatgctgttgatggctga
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