Vitis riparia (riverbank grape): 117916143
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Entry
117916143 CDS
T07274
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vri04131
]
117916143
04121 Ubiquitin system [BR:
vri04121
]
117916143
Enzymes [BR:
vri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117916143
Membrane trafficking [BR:
vri04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
117916143
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117916143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-C3HC4_3
zf-ANAPC11
zf-RING_UBOX
Rad50_zn_hook
zf-HC5HC2H
HypA
zf-RING_5
zf-RING_10
DUF6986
Motif
Other DBs
NCBI-GeneID:
117916143
NCBI-ProteinID:
XP_034687905
LinkDB
All DBs
Position
6:complement(22766891..22769106)
Genome browser
AA seq
368 aa
AA seq
DB search
MEDAMGGRYWCHSCSQVVNPIAEAEPKCPLCQGGFIEDIDGTTSRDHNDSDSDLASDRTL
SLWAPILLGMMGNPRRRRRFRREDIEDEEEDNEDGEGRRGGETELDRELDSIIRRRRRSS
ATILQLLQGIRAGMVSESENSENDRDRDRDRERERERERLILINPFNQTIIVQGSFDSNQ
AQNQNQNTIGSLGDYFIGPSLDLLLQHLAENDPNRYGTPPAQKDAIEAMPTVKIKENLQC
SVCLDDFEIGAEAREMPCKHKFHSGCILPWLELHSSCPVCRFQIAADESKLDSDASPNVS
SNSSERSNNGHGSSEEGDGDGRSGNGRRSTFRWPFTSLFSSQGSQTSNGNSSSSGANAPG
SASRANEN
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgcaatgggaggaagatactggtgccatagttgctcacaagtggtgaatccc
atcgctgaagcagagcccaagtgccccttgtgtcaaggtggattcattgaggacatcgat
ggcaccacttcaagggatcataatgactccgactctgatctagcttccgatcgaaccctc
tctctttgggccccaatcttgttgggcatgatgggtaatcctcgtcggcgccgcagattc
agaagagaagatatagaagatgaggaggaggacaatgaagatggtgagggtcgtagagga
ggagagactgaacttgatcgggaacttgattccataatcaggaggagaaggagaagttct
gctactattctccaactacttcaaggcattagagctggaatggtctctgaatcagagaat
tctgaaaatgatagggatagggatagggatagagaaagagaaagggaaagagagcgcctg
attctaataaatcctttcaatcaaactataattgttcagggttcttttgattcaaaccag
gcccaaaatcagaatcaaaacaccattggctccctgggggactatttcattggccccagt
ttagatttgttgctgcaacatttagcagaaaatgatcctaatagatatgggacaccaccg
gcgcaaaaagatgcaattgaagcaatgcccactgtgaaaattaaggagaatttgcagtgt
tcagtgtgtttggatgattttgagattggcgctgaggcaagggagatgccatgtaagcat
aaattccacagtgggtgtattctgccatggctggagcttcatagctcttgtcccgtctgc
aggtttcagatagcagctgatgaatccaagcttgattcagatgcttctccgaatgttagc
agtaacagtagcgagaggagtaacaatggccatggtagcagtgaagagggagatggggat
gggagaagtggaaatggcagaaggtctacgttcaggtggccttttaccagtttattttct
tcccaaggatcacaaactagcaatgggaattcctcatcatcaggagcaaatgcaccaggg
agtgcatctagggcaaatgagaattga
DBGET
integrated database retrieval system
