Vitis riparia (riverbank grape): 117916203
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Entry
117916203 CDS
T07274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117916203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117916203
03041 Spliceosome [BR:
vri03041
]
117916203
03009 Ribosome biogenesis [BR:
vri03009
]
117916203
03016 Transfer RNA biogenesis [BR:
vri03016
]
117916203
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117916203
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117916203
Spliceosome [BR:
vri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117916203
Complex C
U4/U6.U5 tri-SnRNP related factors
117916203
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Pre-60S particles
Helicases
117916203
Transfer RNA biogenesis [BR:
vri03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117916203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
117916203
NCBI-ProteinID:
XP_034688004
LinkDB
All DBs
Position
6:7524099..7546936
Genome browser
AA seq
994 aa
AA seq
DB search
MGSLKRKSTEDPSVERLSPQKQQREDSALLNTLEESVACIHDVSYPEGYEPRSSFSSSPR
KDSKPAKEFPFTLDPFQSEAIKCLDAGESVMVSAHTSAGKTVVALYAIAMSLQNNQRVIY
TSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIIREVA
WVIFDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVHQQPCHIV
YTDYRPTPLQHYIFPSGGNGLYLVVDEKGKFREDSFQKALNALVPAGEGDKKRENGKRQK
GLVVGRAGEESDIFKMVKMIIQRQYDPVILFSFSKRDCEFLAMQMARMDLNDDNEKVNIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEFIQMSGRAGRRGIDERGICILMVDE
KLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQMRSEDGDPEKLLRNSFYQFQADRAIPDL
EKQAKNLEEERDSIIIEEEDSVENYYNLIQQYRSLKKDVCDIVFSPRYCLPFLQPGRLVC
IQCTKTEENSPSFCIKDQTTWAVIINFERVKGTEDDASRKPEDADYTVDVLTRCTVSRDG
VLKKTIKIVSLKEPGEPVVVTVPISQIDSLSSVRLIISKDLLPLEARENTLKKVSEVLSR
FAKEGMPLLDPEEDMKVQSSQYRKAVRRIEALESLFDKHEVAKSPLIEQKLKALHMKKEL
MAKIKSIKRTMRSSTALAFKDELKARKRVLRKLGYVTSDNVVELKGKVACEISSADELTL
TELMFNGVFKDIKVEDMVSLLSCFVWREKLQDAQKPKDELELLFTQLQDTARRVAKVQLE
SKVQIDVESFVNSFRPDIMEAVHAWAKGSKFYQIMEITQVFEGSLIRAIRRLEEVLQQLI
QAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgctgaagagaaaatcaacagaagacccgtccgtcgagcgcctctctccacag
aaacaacagcgagaagacagtgctttactcaatacgttagaagaatccgtggcttgcata
cacgatgtttcgtacccagagggctacgagccacgttcttccttttcgtcttcgccccgg
aaagattcgaaacctgcaaaggagttcccgttcactctcgaccctttccagtccgaagca
atcaaatgcctcgacgccggggaatctgttatggtatcagctcatacatcagcaggaaag
actgttgtggcattatatgctattgccatgtcattgcaaaacaatcaacgagtaatatac
acttcgcctatcaaggcactcagcaaccaaaagtatagagaatttaaagaagaattctca
gatgttggtttgatgactggggatgtcaccattgagcccaatgcttcttgcttggtaatg
accacagaaatctggagaagtatgcaatacaagggatcagaaattatacgggaggtggct
tgggtaatttttgatgaggtacattacatgcgtgatagggaaagaggtgtggtatgggaa
gaaagcattgtcatggctccaaggaactcacgatttgtattcctctcggcaactgtgcct
aatgcaaaggaatttgctgattgggttgcaaaggtccatcagcaaccgtgtcacattgtt
tatactgattatcggccaacaccacttcagcattatatttttccttctggaggcaatggt
ctctacttggtggtggatgaaaagggaaaatttcgtgaggatagctttcagaaagcttta
aatgcacttgttcctgctggtgaaggtgacaagaaaagagaaaatgggaaaaggcagaaa
ggactggtggtgggcagagctggtgaagaaagtgacattttcaagatggtgaaaatgatt
attcagcgtcagtatgatcccgtgatacttttcagcttcagtaaaagggattgcgaattt
cttgcaatgcagatggcaagaatggatttaaatgatgacaatgagaaagtgaacatagaa
actatattctggagtgctatggacatgctttcagatgatgataaaaagttacctcaggtt
tcaaatatgctacccctcttaaaacgtggaataggcgtgcaccattctgggttgcttccc
atactgaaggaagtgattgagatactatttcaagaaggtctcattaagtgtttgtttgcc
acagagactttcagcattggtttgaacatgccagcgaagactgtagtgtttacaaatgtt
cgtaaatttgatggggataaatttagatggatatccagtggggagtttatacagatgagt
ggtcgtgctggtcgtcgaggcattgatgaacggggaatatgcatccttatggtggatgag
aagctagaaccttctactgctaagatgatgctcaaaggaagtgctgattgcttgaacagt
gccttccatttaagttacaacatgcttctgaatcaaatgcgatctgaggatggtgatcct
gaaaagttgcttcgcaattcattttatcaatttcaagcagaccgtgccattcctgatctt
gagaaacaagcaaagaaccttgaagaagagagggattcaattataattgaggaagaagat
agtgtggagaattattacaacctgatacagcagtataggagtttgaagaaggatgtctgt
gatattgtgttttctccaagatactgcttgcccttcttgcaacctggaaggcttgtgtgc
atccaatgcacaaagactgaggaaaattccccatctttctgtatcaaggaccagaccaca
tgggcagtgattatcaattttgaaagggtgaaaggtactgaagatgatgcaagtagaaaa
ccagaggatgcagactacacggtggatgttctaaccagatgtacagttagtagggatgga
gttttaaaaaagacaattaagattgtttcgttgaaggagcctggagaacctgttgttgtt
actgttcctatttctcagattgatagtttaagtagtgtccgtctgatcatatcaaaggat
cttttgccattggaagctcgagaaaacaccctgaaaaaggtgtcggaagttctttctaga
tttgctaaagaagggatgcccctcctagatcctgaggaagacatgaaggttcaaagtagc
cagtacagaaaggctgtccgtaggatagaagctttagagagcttgtttgacaagcatgaa
gttgcaaaatctccacttattgagcagaagcttaaagctttgcatatgaagaaagaattg
atggccaagatcaagtcaattaagagaacaatgcgctcttccactgcattggctttcaaa
gatgaactcaaggcaaggaaacgggttcttcggaagctagggtatgtcacaagtgacaac
gttgtggagttgaaggggaaggttgcttgtgaaatcagtagtgcggatgagttgactctc
acggagcttatgttcaatggggttttcaaagacataaaggtggaggatatggtttctctt
ctgtcttgttttgtgtggcgggagaagcttcaagatgctcaaaagccaaaggatgaactt
gagttgctatttacacagttacaagatacagctaggagggttgccaaagttcagctggag
agcaaggtccaaattgatgtggagagctttgtgaattctttccggcctgatatcatggag
gctgtgcatgcttgggccaaagggtccaaattctatcagattatggaaatcacacaagtg
tttgaaggaagcttgatcagggctattaggagactggaggaagttctacagcaactcata
caagcagccaaatccattggagaaactgagcttgaagcaaaatttgaagaggctgtttcc
aagattaagagggacatagtctttgcagcatctctgtacttgtag
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