KEGG   Vitis riparia (riverbank grape): 117916299
Entry
117916299         CDS       T07274                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03030  DNA replication
vri03410  Base excision repair
vri03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117916299
   03410 Base excision repair
    117916299
   03420 Nucleotide excision repair
    117916299
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vri03032]
    117916299
   03400 DNA repair and recombination proteins [BR:vri03400]
    117916299
Enzymes [BR:vri01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     117916299
DNA replication proteins [BR:vri03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    117916299
DNA repair and recombination proteins [BR:vri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      117916299
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 DNA_pol_B zf-DPOE DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 117916299
NCBI-ProteinID: XP_034688144
LinkDB
Position
6:complement(2232147..2323253)
AA seq 2214 aa
MSGEIRRRDRADVWKHKKQKLIRNAEEEVESKLGLDLFSEGEKRLGWLLTFASSSWEDEE
THKVYSCVDLYFVSQDGSSFKSKYKFRPYFYAATKDKMEMDVEAYLRRRYEGQIADIEIM
YKEDLDLKNHLSGLCKSYLKISFDNVQQLMHVKSDLLHVVERNRAKFDAAEAYESILTGK
SKQRTQDFIDYIVDLREYDVPYHVRFAIDNDVRCGQWYDVNVSSAGVMLERRTDLLQRAE
VHVCAFDIETTKLPLKFPDAEYDLVMMISYMVDGQGYLIINRECVGEDIEELEYTPKPEF
EGCFKVTNVKNEEELLRMWFAHMREVKPGIYVTYNGDFFDWPFLESRAAHHGLKMSDEVG
FQCDKNQGECRAKFSCHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF
AKELPQMMASYSVSDAVSTYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMV
QAYKANVICPNKHQSDPEKFYHNQLLESETYIGGHVECLESGVFRSDLPTSFKLDPSSYE
QLIVNLDRDLQYAIRVEGKMDVESVSNYDEVKNAIKEKLMKLQGEPIREEFPLIYHLDVA
AMYPNIILTNRLQPSSIVSDEICTACDFNRPGKNCLRKLEWVWRGEAFMAKKSDYYHLKR
QIESELVDGEDNRFSKSFIDLPKTEQQLKLKERLKKYCQKAYKRVLDKPATELREAGICM
RENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIRIQEAQDMVVLYDSLQLAH
KCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGRPLELDTDGIWCVL
PGSFPENFTFRTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLIDPINKTYATHSECSI
EFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAEL
FDKFLHGSSLEECYAAVASVANRWLDLLDNQGKDIVDSELLDYISESSTMSKSLADYGEQ
KSCAVTTARRLADFLGDTMVKDKGLRCQYIVACEPRGTPVSERAVPVAIFETDAEIMKFY
VRKWCKISSDVGIRSIVDWSYYKQRLGSAIQKIITIPAAMQKVANPVPRVVHPDWLYKKV
REKEEKFRQRKLVDMFGSLKRDDNVKMNVDAITSNHVISEENIEDLEDFRNKGRTSSAGP
RPIVRCYEVNGKQQSDAMNCLANSPQQPANHSESALTPMQSTDISTDNIDRNVDYQGWLE
MKKRKWKDAREKRKRQRMDNSKTSNQANGVSELPGGVINHKQAQGRTGVNSYFRRHELAL
THSYWQIIQLAPSSQHGQFFAWVIVEGVMLKIPITVPRVFYLNSKAPITEEFPGRRVNKT
LPHGHHSYNLIEIIIDEDQFRGESRKLAAHLADPEVEGIYETKVPLEFNAVLQIGCVCKV
DKTAKKRNIQDGWSLSELHMKTTTECPYLEQSISFFYLYHSISEGRAIYVGYFPASRTIS
VVVVNPFQNKELSPSIIEKQFREACEALSIEPPQPRNGISFKVDYVGYVKDAEKFLQRTI
NDHRHQHHGPEVAVIECPNVHLLKSGIRALDDLPCVNIPSNARDSHYQALGWQIVAAKIG
MQRCAAATQWLNERISLARYAHVPLGNFEPDWLIFTADLFFSRALRDQQQVLWISDNGIP
DLGGLNEEDTCFADEVHQPVLTYPGAYRKVAVELKIHHLAVNALLKSNQVNEMEGGALFG
FEQDMNMGAHGFNEQCGFDEATLCAPTFRVLKQLIQRCLADAVSSGNVFADAILQHLYRW
LYSPQSKLHDPALHRILHKVMQKVFALLLAEFRKLGAAIVFANFSKVIIDTGKSDLSAAK
AYCDSLLKTLQTRDLFEWIEIEPLHFWHSLLFMDQYNYGGVQARSHGGSLIGSSDPTSES
IEDESQVDIVSSWNIAEQLPKTIQDHFVLIVSEFMYTPWKYAREQAANRASARNGDSCTP
SITAAAAEVFESHITEYLKEQISSYFADKLLRIVRDTVLHMKGMNRSENDQHTGDAALEF
IKHVCAVLALDQNVQHDILVMRKNLLKYVHVREFAPEAEFCDPCQSFILPNVICSYCNDC
RDLDLCRDSALLAQEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHVQDLVCLKCNQV
KAAHLAEQCSCAGSFRCKEDVSEFQSKMQVFLKIAMHQKFQLLQECTSWILEIR
NT seq 6645 nt   +upstreamnt  +downstreamnt
atgagcggcgaaatcagaaggcgagatcgcgcagatgtgtggaagcacaagaaacagaag
ctgatccgaaatgccgaagaggaagtggagtcgaagctagggttggatctcttctccgaa
ggcgaaaagcgcctcggttggttgctcaccttcgcatcctcatcttgggaggatgaagag
acccacaaggtctacagctgcgttgatctttattttgtttctcaggatggttcttctttc
aaatcaaagtacaagtttcgtccttatttctatgcagccacaaaggataaaatggaaatg
gatgttgaggcatatttgagacgacgctatgaaggtcagattgcggatatagagattatg
tataaagaggacctcgatttaaaaaaccatttgtctggcttatgcaaatcttatctaaag
atatcttttgataatgttcaacaattaatgcacgtgaagagtgatcttctgcatgttgtt
gaaagaaaccgggcgaaatttgatgctgcagaagcttatgaatctatattgacagggaaa
agtaaacaaagaactcaagatttcatagattatattgttgatctccgcgagtatgacgtt
ccttatcatgttcggtttgccattgacaatgatgtcagatgcgggcaatggtatgatgtc
aatgtatccagtgctggtgttatgctagagaggaggactgatcttttgcaacgtgctgaa
gttcacgtgtgtgcatttgatattgagacaacgaagcttccattaaaatttccagatgct
gaatatgatttagtaatgatgatctcatacatggttgacgggcaaggctacctgataatt
aacagagagtgtgttggggaagatatagaggagttggagtatactccaaaacctgaattt
gaaggttgttttaaagttacaaatgtaaaaaatgaggaagagcttcttagaatgtggttt
gcccatatgcgtgaggttaagcctggaatttatgttacatacaatggtgatttttttgac
tggccatttctggaaagcagagctgcacatcatgggttgaaaatgagtgatgaggtagga
ttccaatgtgacaaaaatcagggtgaatgtcgtgctaaattttcttgtcacctggattgt
tttgcttgggtcaaacgtgatagttatctccctcagggaagccaggggctaaaggctgtt
accaaggctaagctgggatatgatccactggaggtgaatcctgaggatatggttcgattt
gcaaaggaattgccccagatgatggcttcatattctgtatctgatgctgtttctacttac
tacttgtatatgacgtatgtgcatccctttattttctcccttgcaactataatacccatg
ccaccagatgaagttttgcgcaaaggaagtgggactctgtgtgaaatgcttcttatggtt
caggcttacaaggcaaatgttatctgcccaaataaacaccaatctgatcctgagaaattc
taccataaccaacttttggagagtgagacatatataggtggacatgtggaatgccttgaa
agtggtgttttcagatcggatcttccaactagttttaagcttgatccatcttcctatgag
caactgattgtcaatcttgatcgtgatctacaatatgccataagagtagagggaaagatg
gatgtggaatcagtctccaattatgatgaagtgaagaatgctatcaaggaaaagcttatg
aagttgcaaggtgaacctatacgtgaagaattccccctcatttatcatctagatgtggct
gcaatgtatccaaatattattttgacaaataggcttcagccttcgtcaatagtttcagat
gagatttgtactgcatgtgattttaatcgtccaggcaaaaattgtcttcgtaaacttgaa
tgggtttggcgtggagaggcattcatggcgaagaaaagtgactattatcatttgaagaga
caaattgagtctgagttagttgatggtgaagataaccggttctcaaaatcttttattgac
ctgcctaagacagagcaacagctgaagctcaaagagcgcttaaagaaatactgccaaaag
gcttataaacgggtacttgacaagccagccactgaacttcgagaagcagggatttgcatg
cgggaaaattctttttatattgacactgtccgcagttttcgagatagaagatatgagtac
aaaggacttaataaggtttggaaggggaagctatcagaagccaaggctagtggaaattct
ataaggatccaggaagcacaagatatggttgttctctatgattcactacaacttgctcat
aaatgtattctcaattccttctatggatatgtcatgcgcaagggtgcaagatggtactcg
atggaaatggctggagttgttacctatactggagcaaaaatcatacagaatgcccgctta
ttgattgaaaaaattggaagaccacttgaactagacactgatggtatctggtgtgtgtta
cctggatcttttccagagaacttcacctttagaacaaaagacttgaagaagaagttgaca
atttcatatccttgtgttatgctaaatgttgatgtggctagaaataatacaaatgatcaa
taccagacactcattgatcccatcaataaaacatatgcaacacatagtgaatgctctatt
gaatttgaagtggatggaccatacaaggcaatgattcttccagcttccaaggaagaagga
attttgattaaaaaacgctatgctgtcttcaatgatgatggaactcttgcagagcttaag
ggttttgagatcaagcgtagaggtgagctgaagctcatcaaagttttccaggctgagctt
tttgacaagttccttcatggttcatccttagaggaatgctatgcagcagtggcttcagtt
gcaaaccgttggctcgatcttcttgataatcaagggaaggatattgtggatagcgagttg
cttgattacatatcggaatcaagcaccatgagcaagtctttagcagattatggcgagcaa
aagtcatgtgcagtgaccactgctagacggctggctgattttcttggtgatacgatggtt
aaagataaaggacttcgttgccagtatatagttgcatgcgagccaaggggaacacctgta
agcgagcgtgctgttcctgttgcaatatttgaaactgatgctgaaattatgaagttttat
gtgaggaagtggtgcaagatttcatcagatgttggcattcggtctattgttgattggtca
tattacaaacagcgacttggttctgcaattcaaaaaattataaccattcctgctgcaatg
caaaaggttgcaaatcctgtccctagggtagttcatcctgattggctgtataagaaggtt
cgtgaaaaggaggaaaaatttcgccaacgaaaattagttgatatgtttggctcgttgaag
agggatgataatgtcaaaatgaatgtcgatgctatcacctccaatcacgttatttctgaa
gagaatattgaagatttggaagacttcagaaacaaaggcagaacttcctcagctggacct
agacccattgttcgttgttatgaagttaatggcaaacaacagtcagatgctatgaattgc
ctagcaaattccccccaacaaccagccaatcatagtgaaagtgcattgacgccgatgcag
tctactgatatctctactgataatattgacagaaatgtggattatcaaggatggcttgag
atgaagaagagaaagtggaaagatgctcgagagaaaaggaagaggcaaaggatggataat
tcaaagacatcaaatcaggctaatggtgtctcagagcttccaggtggtgtgataaatcat
aagcaagcacagggaagaactggcgttaattcatatttccggaggcatgaattagccctt
acacactcttattggcagataatacagcttgccccaagttcacagcatggccagtttttt
gcttgggttattgtagaaggagtgatgctcaagattcctattactgttcctagagtgttt
tacctcaactctaaagctccaataacagaggagtttccaggaaggcgtgtcaacaagact
cttccacatgggcatcatagctataacctaattgagattataattgatgaagatcaattt
aggggagagagcagaaaacttgcagctcacttagcagatccagaagttgagggaatatat
gaaacaaaggtgccattggagtttaatgctgtcctccagattgggtgtgtttgcaaagtg
gataaaactgctaagaaacgtaacatccaagatggctggagtttgagtgagttgcacatg
aagaccacaactgaatgcccttatctggaacagtccatctctttcttttacttgtaccat
agcatctctgagggacgagctatatacgttggatattttcctgcatctagaaccatatct
gttgtggtggttaacccttttcaaaacaaagaattatcaccatctattatcgaaaaacaa
ttccgtgaagcttgtgaagcattgtctattgaacctcctcagcctagaaatggtatcagt
ttcaaggtggactacgttggatatgttaaggatgctgaaaaattcttacaaagaacaata
aatgaccacaggcatcaacatcatggacctgaagttgctgttatcgaatgcccaaatgtt
catttgttgaagtcaggtatacgggctttagacgatctcccatgtgtcaacattccttca
aatgctcgtgattctcattatcaggctcttggatggcaaattgtggctgcaaaaattgga
atgcaacgctgtgcagcggcaactcagtggttgaatgagagaatttctcttgcaagatat
gcccatgtaccgctggggaatttcgagcctgattggcttatatttacagcagatctcttc
ttttcaagagctttacgtgatcagcaacaggtgctttggatatctgataatggaattcca
gatctaggaggccttaatgaagaagatacatgttttgctgatgaggtccatcaacctgtt
cttacttatcctggtgcttatagaaaagttgctgtggagctaaagattcatcaccttgct
gtaaatgctcttctgaaaagtaaccaagtaaatgaaatggaaggaggtgctttatttgga
tttgaacaggacatgaatatgggagcacatggtttcaatgaacagtgtggctttgatgag
gcaaccttatgtgcgcctacatttcgtgtcctaaaacaattgatccaaaggtgcctagca
gatgcagtttcatctggaaatgtatttgctgatgcaatactgcaacatctatatcgatgg
ctatacagcccacaatcaaaacttcatgacccagctcttcaccgcattcttcacaaggtc
atgcaaaaggtgtttgcattgttgttagctgaatttcgaaaattgggtgccgcaattgta
tttgctaacttctcaaaggttattatagacaccggaaaatcagacttgtctgcagccaaa
gcatactgtgatagtttactcaaaactctgcaaactagagacttatttgagtggattgag
attgagccattgcacttctggcattccttgctttttatggatcagtacaactatggtggg
gtccaggccagatcccatggtggatcattaataggtagttcagatccaactagtgaaagc
atagaagatgaatctcaagtggatattgtatcaagctggaacattgctgaacaattgcca
aagacaattcaagatcattttgttttgatagtttctgaatttatgtataccccatggaaa
tatgcacgagagcaagcggcaaatagagcatctgcaaggaatggtgactcatgtactcca
tcaatcactgctgcagctgctgaggtttttgaatcacacattactgaatatctcaaagag
cagatcagctcttattttgcggacaagcttcttagaattgttcgtgatacggttcttcat
atgaaaggaatgaacagatctgagaatgaccagcatactggggatgctgcacttgagttc
attaagcatgtttgtgctgttctagctcttgaccaaaatgttcagcatgatattctggta
atgaggaagaatctgttaaaatatgtgcatgtgagggagtttgctccagaggcagagttt
tgtgatccctgccagtctttcatcttaccaaatgttatttgcagctattgcaatgactgt
agagacctggacttatgccgtgattcagctttattggctcaggagtggcgttgtgctgtg
ccacagtgtgggcagccttatgaccgtgaggtaatggagaatgctcttcttcaaattgta
cgacagagagaacgtctctaccatgtgcaggacttggtgtgcctcaagtgcaatcaggtg
aaagcagcacatttggctgagcaatgttcatgtgccggctcattcaggtgcaaggaagac
gtgtctgaattccaaagcaaaatgcaggttttcttgaaaatagccatgcatcagaaattt
caacttctccaggaatgcacctcctggattttggagatcagataa

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