Vitis riparia (riverbank grape): 117916384
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Entry
117916384 CDS
T07274
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117916384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117916384
03110 Chaperones and folding catalysts [BR:
vri03110
]
117916384
03029 Mitochondrial biogenesis [BR:
vri03029
]
117916384
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vri04147
]
117916384
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
117916384
Messenger RNA biogenesis [BR:
vri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
117916384
Chaperones and folding catalysts [BR:
vri03110
]
Heat shock proteins
HSP60 / Chaperonin
117916384
Mitochondrial biogenesis [BR:
vri03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
117916384
Exosome [BR:
vri04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117916384
Exosomal proteins of other body fluids (saliva and urine)
117916384
Exosomal proteins of breast cancer cells
117916384
Exosomal proteins of colorectal cancer cells
117916384
Exosomal proteins of bladder cancer cells
117916384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
KH_PARP14_2
Motif
Other DBs
NCBI-GeneID:
117916384
NCBI-ProteinID:
XP_034688242
LinkDB
All DBs
Position
6:complement(22654362..22660044)
Genome browser
AA seq
608 aa
AA seq
DB search
MASAFTTMSSVGSLAAPGGRGMEKKLATSSDRLSSFASISSSSFGRRQNVVLRRTRSPRI
NAMAKDLYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA
KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
RGIEKTTKSLVAELKLMSKEVEDSELADVAAVSAGNNHEVGNMIAEAMSKVGRKGVVTLE
EGKSAENSLYVVEGMQFDRGYISPYFVTDSEKMAVEFENCKLLLVDKKITNARDLINVLE
DAIRGGYPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGG
TVIRDEVGLTLDKAEKEVLGHAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIRNLIEAAEQ
EYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
LLRLASKVDAIKDTLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPK
YGFNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPVVAGNP
MDNSGYGY
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcatcggctttcactaccatgtcttctgttggctccttggctgctcctggtggtcgt
gggatggaaaagaaacttgcaacttcatcagacagattatcatcttttgcttccatatct
tcaagctcatttggtaggagacaaaatgttgttctacgaaggacacgatctcccaggatc
aatgctatggcaaaggatttgtatttcaacaaagatggctctgctatcaagaagctgcag
actggagtaaataaacttgctgatctagtgggagttacacttggtccaaaaggcaggaat
gttgtcctagagagcaagtatggctccccaaaaattgttaatgatggtgtaactgtggcc
aaagaggttgagttggaggatcctgttgagaatattggtgctaaattagtgagacaagca
gctgccaagaccaacgacttggctggggatgggacaacaacatctgttgttcttgcacaa
gggcttattgctgaaggtgtcaaggtggtagcagctggtgcaaaccctgttctaatcact
cgaggcattgagaagaccacaaaatctctagtggctgagcttaagctgatgtcaaaagag
gttgaagacagtgagctagcagatgttgcagctgttagtgcaggaaacaaccatgaagtg
ggaaatatgattgccgaagcaatgagtaaagtgggtcgaaagggtgtggtgacccttgaa
gagggaaaaagtgcagagaacagcttgtatgttgttgaaggaatgcaatttgaccgtggt
tatatctcaccttactttgtcaccgatagtgagaaaatggcagttgaatttgagaactgc
aagttgcttcttgtagacaagaagataacaaatgcaagagatctcattaatgttctggaa
gacgctattaggggtggatacccaatcttgataattgcagaagatattgagcaggaagct
ttggcaacactggttgtgaataagcttagagggtcattgaagattgctgcacttaaagcc
cctggatttggagagcgcaagagccagtacctggatgacattgcaattctgactggagga
actgtaattagagatgaggtggggctcaccctagacaaagctgagaaggaggttttaggc
catgctgcaaaggtggtgcttaccaaggatacaaccaccattgttggagatgggagcacc
caggaagcagtaaataagcgagttgcacaaattagaaacctcattgaggcagcagagcaa
gaatatgagaaggaaaaacttaatgaaagaattgcaaaattgtcaggtggtgttgctgtg
attcaggttggagcacaaactgagacagagcttaaagaaaagaaactgagagtagaagac
gctctcaatgcaacaaaggcagctgttgaggaagggattgttgtaggtggtgggtgcact
ctcctgagacttgcctcaaaggtggatgccatcaaggacacgcttgataatgatgaggaa
aaggttggagctgatattgtcaagagagctttgagttaccctctgaagttaattgccaaa
aatgctggtgttaatggaagtgtggtcagtgagaaggtgctctccagtgacaatccaaaa
tatgggttcaatgctgcaacaggaaaatatgaagatctaatggctgctggaataattgac
cctactaaggtggtgaggtgttgcctggagcatgcatcatcagtggccaaaactttcttg
atgtcagattgtgtagtggtggaaatcaaagagcctgaaccagtggttgcaggaaatccc
atggacaattcaggttatggatactag
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